Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02405

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02404 and H281DRAFT_02405 are separated by 169 nucleotidesH281DRAFT_02405 and H281DRAFT_02406 are separated by 99 nucleotides H281DRAFT_02404: H281DRAFT_02404 - L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase, at 570,798 to 574,736 _02404 H281DRAFT_02405: H281DRAFT_02405 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 574,906 to 576,054 _02405 H281DRAFT_02406: H281DRAFT_02406 - acetolactate synthase-1/2/3 large subunit, at 576,154 to 577,872 _02406 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -2 -1 0 1at 573.923 kb on + strand, within H281DRAFT_02404at 573.981 kb on + strand, within H281DRAFT_02404at 573.982 kb on - strand, within H281DRAFT_02404at 574.077 kb on + strand, within H281DRAFT_02404at 574.077 kb on + strand, within H281DRAFT_02404at 574.078 kb on - strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.144 kb on + strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.145 kb on - strand, within H281DRAFT_02404at 574.150 kb on + strand, within H281DRAFT_02404at 574.151 kb on - strand, within H281DRAFT_02404at 574.268 kb on + strand, within H281DRAFT_02404at 574.268 kb on + strand, within H281DRAFT_02404at 574.269 kb on - strand, within H281DRAFT_02404at 574.323 kb on + strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.324 kb on - strand, within H281DRAFT_02404at 574.356 kb on - strandat 574.482 kb on + strandat 574.482 kb on + strandat 574.647 kb on + strandat 574.709 kb on + strandat 574.709 kb on + strandat 574.840 kb on + strandat 574.840 kb on + strandat 574.841 kb on - strandat 574.905 kb on + strandat 574.905 kb on + strandat 574.905 kb on + strandat 574.906 kb on - strandat 574.987 kb on - strandat 574.987 kb on - strandat 574.987 kb on - strandat 574.997 kb on + strandat 574.997 kb on + strandat 575.263 kb on + strand, within H281DRAFT_02405at 575.263 kb on + strandat 575.263 kb on + strand, within H281DRAFT_02405at 575.311 kb on + strand, within H281DRAFT_02405at 575.444 kb on - strand, within H281DRAFT_02405at 575.444 kb on - strand, within H281DRAFT_02405at 575.515 kb on + strand, within H281DRAFT_02405at 575.515 kb on + strand, within H281DRAFT_02405at 575.516 kb on - strand, within H281DRAFT_02405at 575.587 kb on + strand, within H281DRAFT_02405at 575.591 kb on - strand, within H281DRAFT_02405at 575.779 kb on + strand, within H281DRAFT_02405at 575.780 kb on - strand, within H281DRAFT_02405at 575.780 kb on - strand, within H281DRAFT_02405at 575.791 kb on + strand, within H281DRAFT_02405at 575.792 kb on - strand, within H281DRAFT_02405at 575.792 kb on - strand, within H281DRAFT_02405at 575.902 kb on + strand, within H281DRAFT_02405at 575.959 kb on + strandat 575.960 kb on - strandat 576.001 kb on + strandat 576.001 kb on + strandat 576.002 kb on - strandat 576.052 kb on + strandat 576.052 kb on + strandat 576.053 kb on - strandat 576.112 kb on - strandat 576.144 kb on - strandat 576.144 kb on - strandat 576.155 kb on + strandat 576.156 kb on - strandat 576.231 kb on + strandat 576.231 kb on + strandat 576.241 kb on + strandat 576.241 kb on + strandat 576.242 kb on - strandat 576.242 kb on - strandat 576.379 kb on + strand, within H281DRAFT_02406at 576.379 kb on + strand, within H281DRAFT_02406at 576.392 kb on + strand, within H281DRAFT_02406at 576.467 kb on + strand, within H281DRAFT_02406at 576.467 kb on + strand, within H281DRAFT_02406at 576.468 kb on - strand, within H281DRAFT_02406at 576.739 kb on + strand, within H281DRAFT_02406at 576.739 kb on + strand, within H281DRAFT_02406at 576.740 kb on - strand, within H281DRAFT_02406at 576.740 kb on - strand, within H281DRAFT_02406at 576.740 kb on - strand, within H281DRAFT_02406at 576.900 kb on - strand, within H281DRAFT_02406at 576.975 kb on + strand, within H281DRAFT_02406at 576.975 kb on + strand, within H281DRAFT_02406at 576.975 kb on + strand, within H281DRAFT_02406at 576.975 kb on + strand, within H281DRAFT_02406at 576.975 kb on + strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 576.976 kb on - strand, within H281DRAFT_02406at 577.042 kb on - strand, within H281DRAFT_02406at 577.042 kb on - strand, within H281DRAFT_02406

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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573,923 + H281DRAFT_02404 0.79 -0.5
573,981 + H281DRAFT_02404 0.81 -0.3
573,982 - H281DRAFT_02404 0.81 -1.1
574,077 + H281DRAFT_02404 0.83 -0.4
574,077 + H281DRAFT_02404 0.83 -0.5
574,078 - H281DRAFT_02404 0.83 +0.2
574,144 + H281DRAFT_02404 0.85 -0.8
574,144 + H281DRAFT_02404 0.85 -1.4
574,144 + H281DRAFT_02404 0.85 -0.3
574,144 + H281DRAFT_02404 0.85 -0.3
574,145 - H281DRAFT_02404 0.85 +0.1
574,145 - H281DRAFT_02404 0.85 -1.3
574,145 - H281DRAFT_02404 0.85 -0.6
574,145 - H281DRAFT_02404 0.85 -1.2
574,145 - H281DRAFT_02404 0.85 -0.2
574,145 - H281DRAFT_02404 0.85 -0.3
574,150 + H281DRAFT_02404 0.85 -2.3
574,151 - H281DRAFT_02404 0.85 -1.3
574,268 + H281DRAFT_02404 0.88 -0.7
574,268 + H281DRAFT_02404 0.88 -1.0
574,269 - H281DRAFT_02404 0.88 +0.5
574,323 + H281DRAFT_02404 0.89 -0.5
574,324 - H281DRAFT_02404 0.90 -0.7
574,324 - H281DRAFT_02404 0.90 -0.2
574,324 - H281DRAFT_02404 0.90 -0.2
574,324 - H281DRAFT_02404 0.90 -0.4
574,356 - -1.1
574,482 + -0.8
574,482 + -0.6
574,647 + -1.0
574,709 + -0.1
574,709 + -0.1
574,840 + -0.6
574,840 + -0.7
574,841 - -1.0
574,905 + +0.2
574,905 + +0.1
574,905 + -0.2
574,906 - +0.1
574,987 - -0.4
574,987 - +0.2
574,987 - -0.3
574,997 + +0.2
574,997 + +0.5
575,263 + H281DRAFT_02405 0.31 -0.1
575,263 + +0.8
575,263 + H281DRAFT_02405 0.31 -0.1
575,311 + H281DRAFT_02405 0.35 +0.3
575,444 - H281DRAFT_02405 0.47 -0.2
575,444 - H281DRAFT_02405 0.47 -0.0
575,515 + H281DRAFT_02405 0.53 +1.5
575,515 + H281DRAFT_02405 0.53 +0.2
575,516 - H281DRAFT_02405 0.53 +0.8
575,587 + H281DRAFT_02405 0.59 +0.4
575,591 - H281DRAFT_02405 0.60 +0.5
575,779 + H281DRAFT_02405 0.76 +0.1
575,780 - H281DRAFT_02405 0.76 +0.8
575,780 - H281DRAFT_02405 0.76 +1.2
575,791 + H281DRAFT_02405 0.77 +0.7
575,792 - H281DRAFT_02405 0.77 +0.4
575,792 - H281DRAFT_02405 0.77 +0.4
575,902 + H281DRAFT_02405 0.87 -0.0
575,959 + +0.5
575,960 - +0.6
576,001 + +0.1
576,001 + +0.3
576,002 - +0.5
576,052 + +0.3
576,052 + -0.2
576,053 - +0.6
576,112 - -0.3
576,144 - -1.6
576,144 - -0.5
576,155 + -0.2
576,156 - +1.1
576,231 + -0.0
576,231 + -0.5
576,241 + -0.3
576,241 + +0.6
576,242 - +0.4
576,242 - -0.5
576,379 + H281DRAFT_02406 0.13 +0.0
576,379 + H281DRAFT_02406 0.13 +0.6
576,392 + H281DRAFT_02406 0.14 +0.3
576,467 + H281DRAFT_02406 0.18 -0.5
576,467 + H281DRAFT_02406 0.18 +0.4
576,468 - H281DRAFT_02406 0.18 +0.6
576,739 + H281DRAFT_02406 0.34 +0.2
576,739 + H281DRAFT_02406 0.34 -0.9
576,740 - H281DRAFT_02406 0.34 -0.5
576,740 - H281DRAFT_02406 0.34 +0.7
576,740 - H281DRAFT_02406 0.34 +0.1
576,900 - H281DRAFT_02406 0.43 +0.1
576,975 + H281DRAFT_02406 0.48 -0.6
576,975 + H281DRAFT_02406 0.48 +0.6
576,975 + H281DRAFT_02406 0.48 -0.6
576,975 + H281DRAFT_02406 0.48 -0.7
576,975 + H281DRAFT_02406 0.48 +0.1
576,976 - H281DRAFT_02406 0.48 +0.3
576,976 - H281DRAFT_02406 0.48 +0.5
576,976 - H281DRAFT_02406 0.48 -0.3
576,976 - H281DRAFT_02406 0.48 +0.7
576,976 - H281DRAFT_02406 0.48 +0.7
576,976 - H281DRAFT_02406 0.48 -0.7
576,976 - H281DRAFT_02406 0.48 -0.4
577,042 - H281DRAFT_02406 0.52 +0.4
577,042 - H281DRAFT_02406 0.52 +0.3

Or see this region's nucleotide sequence