Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02383

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02382 and H281DRAFT_02383 are separated by 4 nucleotidesH281DRAFT_02383 and H281DRAFT_02384 overlap by 1 nucleotidesH281DRAFT_02384 and H281DRAFT_02385 are separated by 162 nucleotides H281DRAFT_02382: H281DRAFT_02382 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 545,742 to 546,797 _02382 H281DRAFT_02383: H281DRAFT_02383 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 546,802 to 548,586 _02383 H281DRAFT_02384: H281DRAFT_02384 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 548,586 to 549,350 _02384 H281DRAFT_02385: H281DRAFT_02385 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme, at 549,513 to 551,471 _02385 Position (kb) 546 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 545.856 kb on - strandat 545.891 kb on + strand, within H281DRAFT_02382at 545.892 kb on - strand, within H281DRAFT_02382at 545.892 kb on - strand, within H281DRAFT_02382at 546.048 kb on + strand, within H281DRAFT_02382at 546.048 kb on + strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.180 kb on + strand, within H281DRAFT_02382at 546.393 kb on + strand, within H281DRAFT_02382at 546.393 kb on + strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.399 kb on + strand, within H281DRAFT_02382at 546.560 kb on + strand, within H281DRAFT_02382at 546.560 kb on + strand, within H281DRAFT_02382at 546.567 kb on + strand, within H281DRAFT_02382at 546.567 kb on + strand, within H281DRAFT_02382at 546.568 kb on - strand, within H281DRAFT_02382at 546.568 kb on - strand, within H281DRAFT_02382at 546.568 kb on - strand, within H281DRAFT_02382at 546.571 kb on - strand, within H281DRAFT_02382at 546.637 kb on - strand, within H281DRAFT_02382at 546.637 kb on - strand, within H281DRAFT_02382at 546.685 kb on - strand, within H281DRAFT_02382at 546.685 kb on - strand, within H281DRAFT_02382at 546.685 kb on - strand, within H281DRAFT_02382at 546.685 kb on - strand, within H281DRAFT_02382at 546.708 kb on + strandat 546.708 kb on + strandat 546.709 kb on - strandat 546.709 kb on - strandat 546.710 kb on + strandat 546.711 kb on - strandat 546.895 kb on + strandat 546.896 kb on - strandat 546.916 kb on + strandat 546.916 kb on + strandat 546.917 kb on - strandat 546.917 kb on - strandat 546.917 kb on - strandat 547.019 kb on - strand, within H281DRAFT_02383at 547.019 kb on - strand, within H281DRAFT_02383at 547.030 kb on + strand, within H281DRAFT_02383at 547.030 kb on + strand, within H281DRAFT_02383at 547.031 kb on - strand, within H281DRAFT_02383at 547.031 kb on - strandat 547.186 kb on + strand, within H281DRAFT_02383at 547.186 kb on + strand, within H281DRAFT_02383at 547.187 kb on - strand, within H281DRAFT_02383at 547.187 kb on - strand, within H281DRAFT_02383at 547.187 kb on - strand, within H281DRAFT_02383at 547.187 kb on - strand, within H281DRAFT_02383at 547.187 kb on - strand, within H281DRAFT_02383at 547.190 kb on + strand, within H281DRAFT_02383at 547.190 kb on + strand, within H281DRAFT_02383at 547.190 kb on + strand, within H281DRAFT_02383at 547.191 kb on - strand, within H281DRAFT_02383at 547.219 kb on + strand, within H281DRAFT_02383at 547.219 kb on + strand, within H281DRAFT_02383at 547.285 kb on - strand, within H281DRAFT_02383at 547.285 kb on - strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.288 kb on + strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.289 kb on - strand, within H281DRAFT_02383at 547.291 kb on + strand, within H281DRAFT_02383at 547.291 kb on + strand, within H281DRAFT_02383at 547.292 kb on - strand, within H281DRAFT_02383at 547.347 kb on + strand, within H281DRAFT_02383at 547.416 kb on + strand, within H281DRAFT_02383at 547.483 kb on + strand, within H281DRAFT_02383at 547.484 kb on - strand, within H281DRAFT_02383at 547.616 kb on + strand, within H281DRAFT_02383at 547.616 kb on + strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.617 kb on - strand, within H281DRAFT_02383at 547.628 kb on - strand, within H281DRAFT_02383at 547.628 kb on - strand, within H281DRAFT_02383at 547.628 kb on - strand, within H281DRAFT_02383at 548.114 kb on + strand, within H281DRAFT_02383at 548.114 kb on + strand, within H281DRAFT_02383at 548.192 kb on + strand, within H281DRAFT_02383at 548.192 kb on + strandat 548.193 kb on - strand, within H281DRAFT_02383at 548.193 kb on - strand, within H281DRAFT_02383at 548.232 kb on - strand, within H281DRAFT_02383at 548.260 kb on + strand, within H281DRAFT_02383at 548.260 kb on + strand, within H281DRAFT_02383at 548.260 kb on + strand, within H281DRAFT_02383at 548.260 kb on + strand, within H281DRAFT_02383at 548.260 kb on + strand, within H281DRAFT_02383at 548.261 kb on - strand, within H281DRAFT_02383at 548.261 kb on - strand, within H281DRAFT_02383at 548.261 kb on - strand, within H281DRAFT_02383at 548.375 kb on - strand, within H281DRAFT_02383at 548.567 kb on - strandat 548.567 kb on - strandat 548.605 kb on + strandat 548.605 kb on + strandat 548.605 kb on + strandat 548.605 kb on + strandat 548.606 kb on - strandat 548.606 kb on - strandat 548.606 kb on - strandat 548.606 kb on - strandat 548.802 kb on + strand, within H281DRAFT_02384at 549.113 kb on + strand, within H281DRAFT_02384at 549.113 kb on + strand, within H281DRAFT_02384at 549.114 kb on - strand, within H281DRAFT_02384at 549.114 kb on - strand, within H281DRAFT_02384at 549.237 kb on + strand, within H281DRAFT_02384at 549.237 kb on + strand, within H281DRAFT_02384at 549.238 kb on - strand, within H281DRAFT_02384at 549.243 kb on + strand, within H281DRAFT_02384at 549.244 kb on - strand, within H281DRAFT_02384at 549.244 kb on - strand, within H281DRAFT_02384at 549.244 kb on - strand, within H281DRAFT_02384at 549.250 kb on + strand, within H281DRAFT_02384at 549.250 kb on + strand, within H281DRAFT_02384at 549.251 kb on - strand, within H281DRAFT_02384at 549.266 kb on - strand, within H281DRAFT_02384at 549.266 kb on - strand, within H281DRAFT_02384at 549.266 kb on - strand, within H281DRAFT_02384at 549.321 kb on + strandat 549.321 kb on + strandat 549.321 kb on + strandat 549.321 kb on + strandat 549.348 kb on + strandat 549.348 kb on + strandat 549.349 kb on - strandat 549.349 kb on - strandat 549.372 kb on - strandat 549.406 kb on + strandat 549.407 kb on - strandat 549.451 kb on + strandat 549.451 kb on + strandat 549.452 kb on - strandat 549.452 kb on - strandat 549.452 kb on - strandat 549.453 kb on + strandat 549.453 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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545,856 - +3.1
545,891 + H281DRAFT_02382 0.14 +0.4
545,892 - H281DRAFT_02382 0.14 -0.6
545,892 - H281DRAFT_02382 0.14 +0.4
546,048 + H281DRAFT_02382 0.29 +0.1
546,048 + H281DRAFT_02382 0.29 +0.9
546,049 - H281DRAFT_02382 0.29 -0.6
546,049 - H281DRAFT_02382 0.29 -0.1
546,049 - H281DRAFT_02382 0.29 +0.6
546,049 - H281DRAFT_02382 0.29 +1.0
546,072 + H281DRAFT_02382 0.31 +1.3
546,072 + H281DRAFT_02382 0.31 -0.1
546,072 + H281DRAFT_02382 0.31 +0.4
546,073 - H281DRAFT_02382 0.31 -0.3
546,073 - H281DRAFT_02382 0.31 +0.3
546,073 - H281DRAFT_02382 0.31 +2.8
546,180 + H281DRAFT_02382 0.41 +0.0
546,393 + H281DRAFT_02382 0.62 +0.6
546,393 + H281DRAFT_02382 0.62 -0.0
546,394 - H281DRAFT_02382 0.62 +0.9
546,394 - H281DRAFT_02382 0.62 +0.3
546,394 - H281DRAFT_02382 0.62 -0.9
546,394 - H281DRAFT_02382 0.62 -0.4
546,394 - H281DRAFT_02382 0.62 -0.0
546,399 + H281DRAFT_02382 0.62 +0.1
546,560 + H281DRAFT_02382 0.77 +0.2
546,560 + H281DRAFT_02382 0.77 +0.6
546,567 + H281DRAFT_02382 0.78 +0.0
546,567 + H281DRAFT_02382 0.78 -0.5
546,568 - H281DRAFT_02382 0.78 -0.0
546,568 - H281DRAFT_02382 0.78 +0.7
546,568 - H281DRAFT_02382 0.78 -0.2
546,571 - H281DRAFT_02382 0.79 -0.7
546,637 - H281DRAFT_02382 0.85 +1.3
546,637 - H281DRAFT_02382 0.85 +0.2
546,685 - H281DRAFT_02382 0.89 -0.7
546,685 - H281DRAFT_02382 0.89 +0.1
546,685 - H281DRAFT_02382 0.89 -1.1
546,685 - H281DRAFT_02382 0.89 -0.2
546,708 + +0.5
546,708 + +0.7
546,709 - -0.1
546,709 - -0.0
546,710 + +0.4
546,711 - +0.6
546,895 + -0.4
546,896 - -0.2
546,916 + -0.8
546,916 + +0.7
546,917 - -0.4
546,917 - -0.3
546,917 - -0.4
547,019 - H281DRAFT_02383 0.12 -0.3
547,019 - H281DRAFT_02383 0.12 +0.4
547,030 + H281DRAFT_02383 0.13 +0.3
547,030 + H281DRAFT_02383 0.13 -0.3
547,031 - H281DRAFT_02383 0.13 -1.1
547,031 - +2.6
547,186 + H281DRAFT_02383 0.22 -1.3
547,186 + H281DRAFT_02383 0.22 -0.4
547,187 - H281DRAFT_02383 0.22 -0.7
547,187 - H281DRAFT_02383 0.22 -1.1
547,187 - H281DRAFT_02383 0.22 -0.6
547,187 - H281DRAFT_02383 0.22 +0.6
547,187 - H281DRAFT_02383 0.22 +0.2
547,190 + H281DRAFT_02383 0.22 -0.0
547,190 + H281DRAFT_02383 0.22 -0.2
547,190 + H281DRAFT_02383 0.22 -1.5
547,191 - H281DRAFT_02383 0.22 +0.0
547,219 + H281DRAFT_02383 0.23 -0.2
547,219 + H281DRAFT_02383 0.23 +0.0
547,285 - H281DRAFT_02383 0.27 +0.7
547,285 - H281DRAFT_02383 0.27 +0.8
547,288 + H281DRAFT_02383 0.27 +0.1
547,288 + H281DRAFT_02383 0.27 +0.1
547,288 + H281DRAFT_02383 0.27 -0.1
547,288 + H281DRAFT_02383 0.27 -0.4
547,288 + H281DRAFT_02383 0.27 +0.1
547,288 + H281DRAFT_02383 0.27 +0.2
547,288 + H281DRAFT_02383 0.27 -0.5
547,288 + H281DRAFT_02383 0.27 -0.2
547,288 + H281DRAFT_02383 0.27 -0.1
547,289 - H281DRAFT_02383 0.27 -0.4
547,289 - H281DRAFT_02383 0.27 -0.3
547,289 - H281DRAFT_02383 0.27 -0.4
547,289 - H281DRAFT_02383 0.27 -0.2
547,289 - H281DRAFT_02383 0.27 -0.2
547,289 - H281DRAFT_02383 0.27 +1.4
547,289 - H281DRAFT_02383 0.27 -2.5
547,289 - H281DRAFT_02383 0.27 -0.5
547,289 - H281DRAFT_02383 0.27 -0.0
547,291 + H281DRAFT_02383 0.27 +0.2
547,291 + H281DRAFT_02383 0.27 -0.5
547,292 - H281DRAFT_02383 0.27 +0.0
547,347 + H281DRAFT_02383 0.31 -0.6
547,416 + H281DRAFT_02383 0.34 -0.2
547,483 + H281DRAFT_02383 0.38 +0.6
547,484 - H281DRAFT_02383 0.38 +0.5
547,616 + H281DRAFT_02383 0.46 -0.2
547,616 + H281DRAFT_02383 0.46 -0.4
547,617 - H281DRAFT_02383 0.46 +0.3
547,617 - H281DRAFT_02383 0.46 -0.0
547,617 - H281DRAFT_02383 0.46 -0.6
547,617 - H281DRAFT_02383 0.46 -0.7
547,617 - H281DRAFT_02383 0.46 -0.1
547,617 - H281DRAFT_02383 0.46 +0.9
547,617 - H281DRAFT_02383 0.46 -0.5
547,617 - H281DRAFT_02383 0.46 +0.6
547,628 - H281DRAFT_02383 0.46 +0.1
547,628 - H281DRAFT_02383 0.46 -0.7
547,628 - H281DRAFT_02383 0.46 -1.4
548,114 + H281DRAFT_02383 0.74 +0.7
548,114 + H281DRAFT_02383 0.74 -0.6
548,192 + H281DRAFT_02383 0.78 -0.2
548,192 + +1.1
548,193 - H281DRAFT_02383 0.78 -0.4
548,193 - H281DRAFT_02383 0.78 -0.2
548,232 - H281DRAFT_02383 0.80 +0.8
548,260 + H281DRAFT_02383 0.82 -0.4
548,260 + H281DRAFT_02383 0.82 +0.1
548,260 + H281DRAFT_02383 0.82 -0.3
548,260 + H281DRAFT_02383 0.82 -1.2
548,260 + H281DRAFT_02383 0.82 +0.4
548,261 - H281DRAFT_02383 0.82 +0.8
548,261 - H281DRAFT_02383 0.82 -0.1
548,261 - H281DRAFT_02383 0.82 +0.2
548,375 - H281DRAFT_02383 0.88 +0.5
548,567 - -0.1
548,567 - -0.7
548,605 + +0.3
548,605 + +0.7
548,605 + +0.1
548,605 + -0.3
548,606 - +3.1
548,606 - -0.1
548,606 - -0.9
548,606 - -0.9
548,802 + H281DRAFT_02384 0.28 +0.0
549,113 + H281DRAFT_02384 0.69 +0.1
549,113 + H281DRAFT_02384 0.69 -0.5
549,114 - H281DRAFT_02384 0.69 +0.9
549,114 - H281DRAFT_02384 0.69 +0.5
549,237 + H281DRAFT_02384 0.85 +0.1
549,237 + H281DRAFT_02384 0.85 +0.3
549,238 - H281DRAFT_02384 0.85 +0.7
549,243 + H281DRAFT_02384 0.86 +0.3
549,244 - H281DRAFT_02384 0.86 -1.0
549,244 - H281DRAFT_02384 0.86 +0.6
549,244 - H281DRAFT_02384 0.86 -0.5
549,250 + H281DRAFT_02384 0.87 -0.3
549,250 + H281DRAFT_02384 0.87 -0.8
549,251 - H281DRAFT_02384 0.87 -1.2
549,266 - H281DRAFT_02384 0.89 -0.4
549,266 - H281DRAFT_02384 0.89 -0.1
549,266 - H281DRAFT_02384 0.89 +0.2
549,321 + +0.1
549,321 + -0.2
549,321 + -0.5
549,321 + +0.6
549,348 + -0.0
549,348 + +0.7
549,349 - +0.1
549,349 - -0.3
549,372 - -0.2
549,406 + -0.1
549,407 - +2.6
549,451 + -0.1
549,451 + +0.5
549,452 - -0.2
549,452 - -0.2
549,452 - +0.2
549,453 + +0.5
549,453 + -0.1

Or see this region's nucleotide sequence