Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02378 and H281DRAFT_02379 overlap by 1 nucleotides H281DRAFT_02379 and H281DRAFT_02380 are separated by 516 nucleotides
H281DRAFT_02378: H281DRAFT_02378 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 540,455 to 541,339
_02378
H281DRAFT_02379: H281DRAFT_02379 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 541,339 to 542,310
_02379
H281DRAFT_02380: H281DRAFT_02380 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 542,827 to 543,993
_02380
Position (kb) 541
542
543 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 540.363 kb on + strand at 540.446 kb on - strand at 540.641 kb on + strand, within H281DRAFT_02378 at 540.642 kb on - strand, within H281DRAFT_02378 at 540.642 kb on - strand, within H281DRAFT_02378 at 540.656 kb on + strand, within H281DRAFT_02378 at 540.755 kb on + strand, within H281DRAFT_02378 at 540.811 kb on + strand, within H281DRAFT_02378 at 540.811 kb on + strand, within H281DRAFT_02378 at 540.811 kb on + strand, within H281DRAFT_02378 at 540.811 kb on + strand, within H281DRAFT_02378 at 540.812 kb on - strand, within H281DRAFT_02378 at 540.812 kb on - strand, within H281DRAFT_02378 at 540.816 kb on - strand, within H281DRAFT_02378 at 540.816 kb on - strand, within H281DRAFT_02378 at 540.816 kb on - strand, within H281DRAFT_02378 at 540.836 kb on + strand, within H281DRAFT_02378 at 540.897 kb on - strand, within H281DRAFT_02378 at 541.055 kb on + strand, within H281DRAFT_02378 at 541.055 kb on + strand, within H281DRAFT_02378 at 541.056 kb on - strand, within H281DRAFT_02378 at 541.352 kb on + strand at 541.352 kb on + strand at 541.357 kb on + strand at 541.358 kb on - strand at 541.406 kb on - strand at 541.406 kb on - strand at 541.474 kb on + strand, within H281DRAFT_02379 at 541.475 kb on - strand, within H281DRAFT_02379 at 541.526 kb on - strand, within H281DRAFT_02379 at 541.526 kb on - strand, within H281DRAFT_02379 at 541.537 kb on + strand, within H281DRAFT_02379 at 541.651 kb on + strand, within H281DRAFT_02379 at 541.652 kb on - strand, within H281DRAFT_02379 at 541.652 kb on - strand, within H281DRAFT_02379 at 541.690 kb on + strand, within H281DRAFT_02379 at 541.690 kb on + strand, within H281DRAFT_02379 at 541.691 kb on - strand, within H281DRAFT_02379 at 541.798 kb on + strand, within H281DRAFT_02379 at 541.820 kb on + strand, within H281DRAFT_02379 at 541.821 kb on - strand, within H281DRAFT_02379 at 541.922 kb on - strand, within H281DRAFT_02379 at 541.926 kb on + strand, within H281DRAFT_02379 at 541.927 kb on - strand, within H281DRAFT_02379 at 542.021 kb on + strand, within H281DRAFT_02379 at 542.022 kb on - strand, within H281DRAFT_02379 at 542.235 kb on + strand at 542.236 kb on - strand at 542.368 kb on + strand at 542.369 kb on - strand at 542.369 kb on - strand at 542.369 kb on - strand at 542.396 kb on + strand at 542.396 kb on + strand at 542.401 kb on + strand at 542.401 kb on + strand at 542.402 kb on - strand at 542.466 kb on - strand at 542.472 kb on + strand at 542.473 kb on - strand at 542.473 kb on - strand at 542.563 kb on - strand at 542.630 kb on - strand at 542.669 kb on - strand at 542.669 kb on - strand at 542.680 kb on - strand at 542.752 kb on - strand at 542.816 kb on - strand at 543.022 kb on + strand, within H281DRAFT_02380 at 543.022 kb on + strand, within H281DRAFT_02380 at 543.023 kb on - strand, within H281DRAFT_02380 at 543.023 kb on - strand, within H281DRAFT_02380 at 543.023 kb on - strand, within H281DRAFT_02380 at 543.098 kb on + strand, within H281DRAFT_02380 at 543.099 kb on - strand, within H281DRAFT_02380 at 543.146 kb on + strand, within H281DRAFT_02380 at 543.147 kb on - strand, within H281DRAFT_02380
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 540,363 + -0.2 540,446 - +0.7 540,641 + H281DRAFT_02378 0.21 -0.1 540,642 - H281DRAFT_02378 0.21 +0.3 540,642 - H281DRAFT_02378 0.21 +0.6 540,656 + H281DRAFT_02378 0.23 +1.2 540,755 + H281DRAFT_02378 0.34 +0.5 540,811 + H281DRAFT_02378 0.40 +0.1 540,811 + H281DRAFT_02378 0.40 +1.3 540,811 + H281DRAFT_02378 0.40 +0.5 540,811 + H281DRAFT_02378 0.40 +0.1 540,812 - H281DRAFT_02378 0.40 -0.5 540,812 - H281DRAFT_02378 0.40 +0.4 540,816 - H281DRAFT_02378 0.41 +0.8 540,816 - H281DRAFT_02378 0.41 +0.5 540,816 - H281DRAFT_02378 0.41 +0.6 540,836 + H281DRAFT_02378 0.43 +0.4 540,897 - H281DRAFT_02378 0.50 -0.0 541,055 + H281DRAFT_02378 0.68 +0.8 541,055 + H281DRAFT_02378 0.68 +0.9 541,056 - H281DRAFT_02378 0.68 +0.8 541,352 + +0.5 541,352 + +0.7 541,357 + +0.1 541,358 - +0.3 541,406 - +1.3 541,406 - -1.3 541,474 + H281DRAFT_02379 0.14 +0.1 541,475 - H281DRAFT_02379 0.14 +0.3 541,526 - H281DRAFT_02379 0.19 -0.4 541,526 - H281DRAFT_02379 0.19 +0.4 541,537 + H281DRAFT_02379 0.20 +0.7 541,651 + H281DRAFT_02379 0.32 -0.2 541,652 - H281DRAFT_02379 0.32 +0.1 541,652 - H281DRAFT_02379 0.32 -0.5 541,690 + H281DRAFT_02379 0.36 +0.7 541,690 + H281DRAFT_02379 0.36 +0.8 541,691 - H281DRAFT_02379 0.36 -0.4 541,798 + H281DRAFT_02379 0.47 -0.1 541,820 + H281DRAFT_02379 0.49 +0.8 541,821 - H281DRAFT_02379 0.50 +0.4 541,922 - H281DRAFT_02379 0.60 +0.5 541,926 + H281DRAFT_02379 0.60 +0.3 541,927 - H281DRAFT_02379 0.60 +0.6 542,021 + H281DRAFT_02379 0.70 +1.0 542,022 - H281DRAFT_02379 0.70 -0.1 542,235 + +0.3 542,236 - +0.4 542,368 + +0.7 542,369 - -0.5 542,369 - -1.5 542,369 - -0.5 542,396 + +0.3 542,396 + +0.3 542,401 + +1.1 542,401 + +0.2 542,402 - -1.0 542,466 - -2.6 542,472 + -3.2 542,473 - -4.9 542,473 - -1.8 542,563 - -3.6 542,630 - -0.6 542,669 - -1.0 542,669 - +0.3 542,680 - +0.6 542,752 - -0.4 542,816 - +0.5 543,022 + H281DRAFT_02380 0.17 +0.3 543,022 + H281DRAFT_02380 0.17 +0.3 543,023 - H281DRAFT_02380 0.17 -0.3 543,023 - H281DRAFT_02380 0.17 -0.0 543,023 - H281DRAFT_02380 0.17 +0.2 543,098 + H281DRAFT_02380 0.23 +3.1 543,099 - H281DRAFT_02380 0.23 +0.0 543,146 + H281DRAFT_02380 0.27 -0.5 543,147 - H281DRAFT_02380 0.27 -0.4
Or see this region's nucleotide sequence