Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02377

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02375 and H281DRAFT_02376 overlap by 4 nucleotidesH281DRAFT_02376 and H281DRAFT_02377 are separated by 55 nucleotidesH281DRAFT_02377 and H281DRAFT_02378 are separated by 166 nucleotides H281DRAFT_02375: H281DRAFT_02375 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 537,484 to 538,263 _02375 H281DRAFT_02376: H281DRAFT_02376 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 538,260 to 539,018 _02376 H281DRAFT_02377: H281DRAFT_02377 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 539,074 to 540,288 _02377 H281DRAFT_02378: H281DRAFT_02378 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 540,455 to 541,339 _02378 Position (kb) 539 540 541Strain fitness (log2 ratio) -1 0 1 2at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.220 kb on - strandat 538.220 kb on - strandat 538.220 kb on - strandat 538.221 kb on + strandat 538.221 kb on + strandat 538.266 kb on - strandat 538.266 kb on - strandat 538.557 kb on + strand, within H281DRAFT_02376at 538.755 kb on - strand, within H281DRAFT_02376at 538.926 kb on + strand, within H281DRAFT_02376at 538.926 kb on + strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 539.005 kb on + strandat 539.006 kb on - strandat 539.014 kb on + strandat 539.015 kb on - strandat 539.016 kb on + strandat 539.016 kb on + strandat 539.016 kb on + strandat 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.197 kb on - strand, within H281DRAFT_02377at 539.197 kb on - strand, within H281DRAFT_02377at 539.210 kb on - strand, within H281DRAFT_02377at 539.381 kb on + strand, within H281DRAFT_02377at 539.452 kb on + strand, within H281DRAFT_02377at 539.453 kb on - strand, within H281DRAFT_02377at 539.506 kb on + strand, within H281DRAFT_02377at 539.507 kb on - strand, within H281DRAFT_02377at 539.519 kb on - strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.525 kb on - strand, within H281DRAFT_02377at 539.590 kb on + strand, within H281DRAFT_02377at 539.608 kb on + strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.856 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strandat 539.913 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.124 kb on + strand, within H281DRAFT_02377at 540.125 kb on - strandat 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.208 kb on + strandat 540.208 kb on + strandat 540.212 kb on - strandat 540.363 kb on + strandat 540.446 kb on - strandat 540.641 kb on + strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.656 kb on + strand, within H281DRAFT_02378at 540.755 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.836 kb on + strand, within H281DRAFT_02378at 540.897 kb on - strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.056 kb on - strand, within H281DRAFT_02378

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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538,181 - H281DRAFT_02375 0.89 +0.5
538,181 - H281DRAFT_02375 0.89 +0.7
538,181 - H281DRAFT_02375 0.89 +0.5
538,219 + +0.5
538,219 + +1.2
538,219 + +0.5
538,219 + +0.1
538,219 + +1.1
538,220 - +0.5
538,220 - -0.7
538,220 - +0.7
538,221 + +0.6
538,221 + +0.7
538,266 - -0.5
538,266 - +1.1
538,557 + H281DRAFT_02376 0.39 +2.3
538,755 - H281DRAFT_02376 0.65 -0.3
538,926 + H281DRAFT_02376 0.88 -0.7
538,926 + H281DRAFT_02376 0.88 +0.3
538,927 - H281DRAFT_02376 0.88 -0.0
538,927 - H281DRAFT_02376 0.88 +1.2
538,927 - H281DRAFT_02376 0.88 +0.0
539,005 + +0.3
539,006 - -0.1
539,014 + +1.5
539,015 - -0.5
539,016 + +0.4
539,016 + +0.1
539,016 + -0.6
539,196 + H281DRAFT_02377 0.10 +0.0
539,196 + H281DRAFT_02377 0.10 -0.5
539,196 + H281DRAFT_02377 0.10 +0.8
539,196 + H281DRAFT_02377 0.10 +0.7
539,197 - H281DRAFT_02377 0.10 +0.2
539,197 - H281DRAFT_02377 0.10 +0.4
539,210 - H281DRAFT_02377 0.11 +1.4
539,381 + H281DRAFT_02377 0.25 +1.1
539,452 + H281DRAFT_02377 0.31 +0.5
539,453 - H281DRAFT_02377 0.31 +0.6
539,506 + H281DRAFT_02377 0.36 +0.3
539,507 - H281DRAFT_02377 0.36 -1.7
539,519 - H281DRAFT_02377 0.37 +0.4
539,524 + H281DRAFT_02377 0.37 +0.4
539,524 + H281DRAFT_02377 0.37 -0.6
539,525 - H281DRAFT_02377 0.37 +0.4
539,590 + H281DRAFT_02377 0.42 +0.6
539,608 + H281DRAFT_02377 0.44 +0.7
539,609 - H281DRAFT_02377 0.44 +0.8
539,609 - H281DRAFT_02377 0.44 -0.1
539,609 - H281DRAFT_02377 0.44 +0.7
539,793 + H281DRAFT_02377 0.59 -0.5
539,793 + H281DRAFT_02377 0.59 +0.6
539,794 - H281DRAFT_02377 0.59 +0.7
539,794 - H281DRAFT_02377 0.59 +0.7
539,856 + H281DRAFT_02377 0.64 +0.2
539,871 + H281DRAFT_02377 0.66 -0.1
539,871 + +0.5
539,913 + H281DRAFT_02377 0.69 -0.4
539,962 + H281DRAFT_02377 0.73 +1.8
539,962 + H281DRAFT_02377 0.73 +0.2
540,028 + H281DRAFT_02377 0.79 +1.8
540,028 + H281DRAFT_02377 0.79 +1.1
540,028 + H281DRAFT_02377 0.79 +1.0
540,112 + H281DRAFT_02377 0.85 +0.5
540,112 + H281DRAFT_02377 0.85 -0.0
540,112 + H281DRAFT_02377 0.85 +0.7
540,124 + H281DRAFT_02377 0.86 +0.1
540,125 - +2.6
540,160 + H281DRAFT_02377 0.89 +0.6
540,160 + H281DRAFT_02377 0.89 +1.0
540,160 + H281DRAFT_02377 0.89 -0.4
540,160 + H281DRAFT_02377 0.89 +0.6
540,208 + -1.7
540,208 + +0.8
540,212 - +0.6
540,363 + -0.2
540,446 - +0.7
540,641 + H281DRAFT_02378 0.21 -0.1
540,642 - H281DRAFT_02378 0.21 +0.3
540,642 - H281DRAFT_02378 0.21 +0.6
540,656 + H281DRAFT_02378 0.23 +1.2
540,755 + H281DRAFT_02378 0.34 +0.5
540,811 + H281DRAFT_02378 0.40 +0.1
540,811 + H281DRAFT_02378 0.40 +1.3
540,811 + H281DRAFT_02378 0.40 +0.5
540,811 + H281DRAFT_02378 0.40 +0.1
540,812 - H281DRAFT_02378 0.40 -0.5
540,812 - H281DRAFT_02378 0.40 +0.4
540,816 - H281DRAFT_02378 0.41 +0.8
540,816 - H281DRAFT_02378 0.41 +0.5
540,816 - H281DRAFT_02378 0.41 +0.6
540,836 + H281DRAFT_02378 0.43 +0.4
540,897 - H281DRAFT_02378 0.50 -0.0
541,055 + H281DRAFT_02378 0.68 +0.8
541,055 + H281DRAFT_02378 0.68 +0.9
541,056 - H281DRAFT_02378 0.68 +0.8

Or see this region's nucleotide sequence