Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02274

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02273 and H281DRAFT_02274 are separated by 173 nucleotidesH281DRAFT_02274 and H281DRAFT_02275 overlap by 23 nucleotidesH281DRAFT_02275 and H281DRAFT_02276 overlap by 4 nucleotides H281DRAFT_02273: H281DRAFT_02273 - hypothetical protein, at 418,820 to 419,194 _02273 H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882 _02274 H281DRAFT_02275: H281DRAFT_02275 - chromosome partitioning protein, ParB family, at 420,860 to 421,774 _02275 H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670 _02276 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2at 418.475 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.645 kb on + strandat 418.646 kb on - strandat 418.646 kb on - strandat 418.648 kb on + strandat 418.807 kb on - strandat 418.859 kb on - strand, within H281DRAFT_02273at 418.859 kb on - strand, within H281DRAFT_02273at 418.985 kb on - strand, within H281DRAFT_02273at 418.992 kb on - strand, within H281DRAFT_02273at 418.992 kb on - strand, within H281DRAFT_02273at 419.036 kb on - strand, within H281DRAFT_02273at 419.213 kb on + strandat 419.214 kb on - strandat 419.214 kb on - strandat 419.215 kb on + strandat 419.215 kb on + strandat 419.216 kb on - strandat 419.230 kb on + strandat 419.230 kb on + strandat 419.231 kb on - strandat 419.360 kb on - strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.368 kb on - strandat 419.389 kb on + strandat 419.459 kb on + strandat 419.461 kb on + strandat 419.461 kb on + strandat 419.461 kb on + strandat 419.462 kb on - strandat 419.551 kb on + strand, within H281DRAFT_02274at 419.551 kb on + strand, within H281DRAFT_02274at 419.552 kb on - strand, within H281DRAFT_02274at 419.577 kb on - strand, within H281DRAFT_02274at 419.660 kb on - strand, within H281DRAFT_02274at 419.660 kb on - strand, within H281DRAFT_02274at 419.709 kb on - strand, within H281DRAFT_02274at 419.725 kb on - strand, within H281DRAFT_02274at 419.789 kb on + strand, within H281DRAFT_02274at 419.789 kb on + strand, within H281DRAFT_02274at 419.790 kb on - strand, within H281DRAFT_02274at 419.790 kb on - strand, within H281DRAFT_02274at 419.790 kb on - strandat 419.790 kb on - strand, within H281DRAFT_02274at 419.866 kb on - strand, within H281DRAFT_02274at 419.954 kb on + strand, within H281DRAFT_02274at 419.964 kb on - strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 420.083 kb on + strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strandat 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274at 420.264 kb on + strand, within H281DRAFT_02274at 420.265 kb on - strand, within H281DRAFT_02274at 420.265 kb on - strand, within H281DRAFT_02274at 420.299 kb on + strand, within H281DRAFT_02274at 420.299 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.404 kb on - strand, within H281DRAFT_02274at 420.418 kb on + strand, within H281DRAFT_02274at 420.418 kb on + strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.577 kb on - strand, within H281DRAFT_02274at 420.648 kb on + strandat 420.715 kb on + strand, within H281DRAFT_02274at 420.715 kb on + strand, within H281DRAFT_02274at 420.719 kb on - strand, within H281DRAFT_02274at 420.769 kb on + strandat 420.769 kb on + strandat 420.877 kb on - strandat 421.132 kb on + strand, within H281DRAFT_02275at 421.133 kb on - strand, within H281DRAFT_02275at 421.201 kb on + strand, within H281DRAFT_02275at 421.250 kb on + strand, within H281DRAFT_02275at 421.252 kb on + strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.295 kb on + strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.297 kb on + strand, within H281DRAFT_02275at 421.364 kb on - strand, within H281DRAFT_02275at 421.368 kb on + strand, within H281DRAFT_02275at 421.440 kb on - strand, within H281DRAFT_02275at 421.496 kb on - strand, within H281DRAFT_02275at 421.520 kb on + strand, within H281DRAFT_02275at 421.521 kb on - strand, within H281DRAFT_02275at 421.521 kb on - strand, within H281DRAFT_02275at 421.740 kb on + strandat 421.750 kb on + strandat 421.751 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
418,475 + +0.3
418,572 + -0.2
418,572 + -0.9
418,572 + -0.1
418,572 + -0.6
418,572 + +0.3
418,572 + -0.7
418,572 + -1.9
418,572 + +0.3
418,572 + +2.1
418,572 + -0.8
418,572 + -0.1
418,572 + +0.7
418,572 + -1.1
418,572 + -0.2
418,572 + -0.5
418,572 + -0.9
418,572 + +0.7
418,573 - -0.5
418,573 - -0.1
418,573 - +0.3
418,573 - +0.6
418,573 - +1.1
418,573 - -0.1
418,573 - +0.6
418,645 + -0.1
418,646 - -0.3
418,646 - +0.0
418,648 + +0.6
418,807 - +0.6
418,859 - H281DRAFT_02273 0.10 +0.2
418,859 - H281DRAFT_02273 0.10 -0.1
418,985 - H281DRAFT_02273 0.44 -0.6
418,992 - H281DRAFT_02273 0.46 -0.6
418,992 - H281DRAFT_02273 0.46 -0.8
419,036 - H281DRAFT_02273 0.58 -0.3
419,213 + +0.0
419,214 - +0.2
419,214 - -0.9
419,215 + +0.4
419,215 + +0.4
419,216 - -0.9
419,230 + -0.8
419,230 + +0.1
419,231 - -1.1
419,360 - -0.7
419,367 + -0.3
419,367 + +0.3
419,367 + +0.5
419,367 + -0.3
419,367 + -1.2
419,368 - +0.1
419,389 + -0.2
419,459 + +0.3
419,461 + +1.5
419,461 + -0.2
419,461 + -1.7
419,462 - +0.3
419,551 + H281DRAFT_02274 0.12 +0.8
419,551 + H281DRAFT_02274 0.12 -0.9
419,552 - H281DRAFT_02274 0.12 +1.0
419,577 - H281DRAFT_02274 0.14 -0.8
419,660 - H281DRAFT_02274 0.19 -0.1
419,660 - H281DRAFT_02274 0.19 -0.1
419,709 - H281DRAFT_02274 0.23 -1.1
419,725 - H281DRAFT_02274 0.24 -0.1
419,789 + H281DRAFT_02274 0.28 +0.5
419,789 + H281DRAFT_02274 0.28 +0.9
419,790 - H281DRAFT_02274 0.28 -0.0
419,790 - H281DRAFT_02274 0.28 -0.4
419,790 - +2.1
419,790 - H281DRAFT_02274 0.28 -0.3
419,866 - H281DRAFT_02274 0.33 -0.2
419,954 + H281DRAFT_02274 0.39 +0.9
419,964 - H281DRAFT_02274 0.39 -0.1
419,965 + H281DRAFT_02274 0.39 -1.3
419,965 + H281DRAFT_02274 0.39 -0.5
419,966 - H281DRAFT_02274 0.39 +0.2
419,966 - H281DRAFT_02274 0.39 +0.1
419,966 - H281DRAFT_02274 0.39 +0.1
419,966 - H281DRAFT_02274 0.39 -1.2
420,083 + H281DRAFT_02274 0.47 -0.9
420,084 - H281DRAFT_02274 0.47 -0.0
420,084 - H281DRAFT_02274 0.47 -0.2
420,097 + H281DRAFT_02274 0.48 +0.5
420,097 + +1.1
420,097 + H281DRAFT_02274 0.48 +0.1
420,097 + H281DRAFT_02274 0.48 +0.5
420,097 + H281DRAFT_02274 0.48 -0.3
420,097 + H281DRAFT_02274 0.48 -0.4
420,098 - H281DRAFT_02274 0.48 -0.5
420,098 - H281DRAFT_02274 0.48 -0.1
420,264 + H281DRAFT_02274 0.59 +0.9
420,265 - H281DRAFT_02274 0.59 +0.6
420,265 - H281DRAFT_02274 0.59 +1.4
420,299 + H281DRAFT_02274 0.61 -0.4
420,299 + H281DRAFT_02274 0.61 +1.2
420,403 + H281DRAFT_02274 0.68 +0.3
420,403 + H281DRAFT_02274 0.68 -0.1
420,403 + H281DRAFT_02274 0.68 +0.6
420,403 + H281DRAFT_02274 0.68 -0.0
420,404 - H281DRAFT_02274 0.68 -0.0
420,418 + H281DRAFT_02274 0.69 -0.8
420,418 + H281DRAFT_02274 0.69 -0.9
420,443 - H281DRAFT_02274 0.71 +0.1
420,443 - H281DRAFT_02274 0.71 -0.3
420,443 - H281DRAFT_02274 0.71 -0.5
420,577 - H281DRAFT_02274 0.80 +0.6
420,648 + +0.5
420,715 + H281DRAFT_02274 0.89 +1.1
420,715 + H281DRAFT_02274 0.89 -0.4
420,719 - H281DRAFT_02274 0.89 +0.4
420,769 + -1.3
420,769 + +0.4
420,877 - +0.3
421,132 + H281DRAFT_02275 0.30 -1.2
421,133 - H281DRAFT_02275 0.30 -0.1
421,201 + H281DRAFT_02275 0.37 -0.6
421,250 + H281DRAFT_02275 0.43 +0.1
421,252 + H281DRAFT_02275 0.43 -0.1
421,253 - H281DRAFT_02275 0.43 +0.5
421,253 - H281DRAFT_02275 0.43 +0.0
421,253 - H281DRAFT_02275 0.43 +0.3
421,295 + H281DRAFT_02275 0.48 +0.3
421,296 - H281DRAFT_02275 0.48 -0.8
421,296 - H281DRAFT_02275 0.48 -0.8
421,296 - H281DRAFT_02275 0.48 +0.0
421,297 + H281DRAFT_02275 0.48 +0.9
421,364 - H281DRAFT_02275 0.55 -0.5
421,368 + H281DRAFT_02275 0.56 -0.9
421,440 - H281DRAFT_02275 0.63 -0.5
421,496 - H281DRAFT_02275 0.70 -0.1
421,520 + H281DRAFT_02275 0.72 -0.0
421,521 - H281DRAFT_02275 0.72 -0.4
421,521 - H281DRAFT_02275 0.72 -0.9
421,740 + +0.7
421,750 + -0.0
421,751 - -0.4

Or see this region's nucleotide sequence