Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02166

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02165 and H281DRAFT_02166 are separated by 274 nucleotidesH281DRAFT_02166 and H281DRAFT_02167 are separated by 155 nucleotides H281DRAFT_02165: H281DRAFT_02165 - amidase, at 304,323 to 305,957 _02165 H281DRAFT_02166: H281DRAFT_02166 - High potential iron-sulfur protein, at 306,232 to 306,543 _02166 H281DRAFT_02167: H281DRAFT_02167 - L-2-hydroxyglutarate oxidase LhgO, at 306,699 to 307,805 _02167 Position (kb) 306 307Strain fitness (log2 ratio) -1 0 1 2at 305.241 kb on + strand, within H281DRAFT_02165at 305.241 kb on + strand, within H281DRAFT_02165at 305.241 kb on + strand, within H281DRAFT_02165at 305.241 kb on + strand, within H281DRAFT_02165at 305.241 kb on + strand, within H281DRAFT_02165at 305.242 kb on - strand, within H281DRAFT_02165at 305.242 kb on - strand, within H281DRAFT_02165at 305.242 kb on - strand, within H281DRAFT_02165at 305.334 kb on - strand, within H281DRAFT_02165at 305.738 kb on + strand, within H281DRAFT_02165at 305.739 kb on - strand, within H281DRAFT_02165at 305.812 kb on - strandat 305.812 kb on - strandat 305.939 kb on + strandat 305.939 kb on + strandat 305.955 kb on + strandat 305.955 kb on + strandat 305.955 kb on + strandat 305.956 kb on - strandat 305.990 kb on - strandat 305.990 kb on - strandat 305.990 kb on - strandat 305.990 kb on - strandat 305.990 kb on - strandat 305.993 kb on + strandat 305.993 kb on + strandat 305.993 kb on + strandat 305.993 kb on + strandat 305.994 kb on - strandat 305.994 kb on - strandat 305.994 kb on - strandat 305.994 kb on - strandat 306.090 kb on + strandat 306.091 kb on - strandat 306.180 kb on + strandat 306.180 kb on + strandat 306.246 kb on + strandat 306.247 kb on - strandat 306.248 kb on + strandat 306.248 kb on + strandat 306.248 kb on + strandat 306.249 kb on - strandat 306.249 kb on - strandat 306.249 kb on - strandat 306.249 kb on - strandat 306.249 kb on - strandat 306.309 kb on - strand, within H281DRAFT_02166at 306.333 kb on - strand, within H281DRAFT_02166at 306.368 kb on + strand, within H281DRAFT_02166at 306.369 kb on - strand, within H281DRAFT_02166at 306.369 kb on - strand, within H281DRAFT_02166at 306.413 kb on + strand, within H281DRAFT_02166at 306.508 kb on - strand, within H281DRAFT_02166at 306.560 kb on + strandat 306.560 kb on + strandat 306.560 kb on + strandat 306.561 kb on - strandat 306.562 kb on + strandat 306.562 kb on + strandat 306.562 kb on + strandat 306.563 kb on - strandat 306.563 kb on - strandat 306.604 kb on + strandat 306.604 kb on + strandat 306.605 kb on - strandat 306.621 kb on + strandat 306.621 kb on + strandat 306.621 kb on + strandat 306.621 kb on + strandat 306.641 kb on - strandat 306.646 kb on + strandat 306.646 kb on + strandat 306.647 kb on - strandat 306.647 kb on - strandat 306.877 kb on + strand, within H281DRAFT_02167at 306.877 kb on + strand, within H281DRAFT_02167at 306.934 kb on + strand, within H281DRAFT_02167at 306.967 kb on + strand, within H281DRAFT_02167at 306.967 kb on + strand, within H281DRAFT_02167at 307.111 kb on + strand, within H281DRAFT_02167at 307.112 kb on - strand, within H281DRAFT_02167at 307.112 kb on - strand, within H281DRAFT_02167at 307.112 kb on - strand, within H281DRAFT_02167at 307.112 kb on - strand, within H281DRAFT_02167at 307.112 kb on - strand, within H281DRAFT_02167at 307.129 kb on + strand, within H281DRAFT_02167at 307.271 kb on + strand, within H281DRAFT_02167at 307.271 kb on + strand, within H281DRAFT_02167at 307.448 kb on + strand, within H281DRAFT_02167at 307.448 kb on + strand, within H281DRAFT_02167at 307.448 kb on + strand, within H281DRAFT_02167at 307.448 kb on + strand, within H281DRAFT_02167at 307.449 kb on - strand, within H281DRAFT_02167

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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305,241 + H281DRAFT_02165 0.56 +0.4
305,241 + H281DRAFT_02165 0.56 -0.2
305,241 + H281DRAFT_02165 0.56 +0.4
305,241 + H281DRAFT_02165 0.56 +0.2
305,241 + H281DRAFT_02165 0.56 +0.4
305,242 - H281DRAFT_02165 0.56 +1.3
305,242 - H281DRAFT_02165 0.56 +0.4
305,242 - H281DRAFT_02165 0.56 -0.5
305,334 - H281DRAFT_02165 0.62 +0.7
305,738 + H281DRAFT_02165 0.87 +0.4
305,739 - H281DRAFT_02165 0.87 +0.7
305,812 - +0.1
305,812 - +0.1
305,939 + -0.2
305,939 + +0.9
305,955 + -0.1
305,955 + +0.1
305,955 + +0.2
305,956 - -0.2
305,990 - -0.3
305,990 - -1.0
305,990 - +0.3
305,990 - +2.0
305,990 - -0.2
305,993 + +0.1
305,993 + +0.4
305,993 + +0.1
305,993 + -1.4
305,994 - -1.7
305,994 - -0.1
305,994 - -0.2
305,994 - -0.4
306,090 + +0.2
306,091 - +0.5
306,180 + -0.5
306,180 + +0.4
306,246 + +0.9
306,247 - +0.2
306,248 + -0.5
306,248 + +1.0
306,248 + +0.3
306,249 - +0.1
306,249 - +1.0
306,249 - +0.0
306,249 - +0.6
306,249 - +1.8
306,309 - H281DRAFT_02166 0.25 +0.8
306,333 - H281DRAFT_02166 0.32 +0.8
306,368 + H281DRAFT_02166 0.44 +0.3
306,369 - H281DRAFT_02166 0.44 -0.1
306,369 - H281DRAFT_02166 0.44 +0.8
306,413 + H281DRAFT_02166 0.58 +0.5
306,508 - H281DRAFT_02166 0.88 +0.3
306,560 + -0.3
306,560 + +0.5
306,560 + +0.2
306,561 - +0.4
306,562 + +1.2
306,562 + +1.2
306,562 + +0.2
306,563 - +0.1
306,563 - +1.3
306,604 + +0.4
306,604 + +0.5
306,605 - +1.3
306,621 + +0.1
306,621 + -0.2
306,621 + +0.5
306,621 + -1.3
306,641 - +0.4
306,646 + +0.0
306,646 + +0.3
306,647 - +0.1
306,647 - -0.2
306,877 + H281DRAFT_02167 0.16 -0.6
306,877 + H281DRAFT_02167 0.16 -0.0
306,934 + H281DRAFT_02167 0.21 +0.2
306,967 + H281DRAFT_02167 0.24 -0.1
306,967 + H281DRAFT_02167 0.24 -0.4
307,111 + H281DRAFT_02167 0.37 -0.3
307,112 - H281DRAFT_02167 0.37 +0.0
307,112 - H281DRAFT_02167 0.37 +0.1
307,112 - H281DRAFT_02167 0.37 +0.2
307,112 - H281DRAFT_02167 0.37 -0.3
307,112 - H281DRAFT_02167 0.37 +0.1
307,129 + H281DRAFT_02167 0.39 +0.1
307,271 + H281DRAFT_02167 0.52 +0.2
307,271 + H281DRAFT_02167 0.52 +1.1
307,448 + H281DRAFT_02167 0.68 -0.2
307,448 + H281DRAFT_02167 0.68 -0.0
307,448 + H281DRAFT_02167 0.68 +0.8
307,448 + H281DRAFT_02167 0.68 -0.3
307,449 - H281DRAFT_02167 0.68 -0.5

Or see this region's nucleotide sequence