Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02164

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02163 and H281DRAFT_02164 are separated by 305 nucleotidesH281DRAFT_02164 and H281DRAFT_02165 are separated by 111 nucleotides H281DRAFT_02163: H281DRAFT_02163 - nitronate monooxygenase, at 302,107 to 303,207 _02163 H281DRAFT_02164: H281DRAFT_02164 - carboxymethylenebutenolidase, at 303,513 to 304,211 _02164 H281DRAFT_02165: H281DRAFT_02165 - amidase, at 304,323 to 305,957 _02165 Position (kb) 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 302.646 kb on + strand, within H281DRAFT_02163at 302.746 kb on + strand, within H281DRAFT_02163at 302.746 kb on + strand, within H281DRAFT_02163at 302.746 kb on + strand, within H281DRAFT_02163at 302.747 kb on - strand, within H281DRAFT_02163at 302.747 kb on - strand, within H281DRAFT_02163at 302.750 kb on + strand, within H281DRAFT_02163at 302.750 kb on + strand, within H281DRAFT_02163at 302.750 kb on + strand, within H281DRAFT_02163at 302.750 kb on + strand, within H281DRAFT_02163at 302.750 kb on + strand, within H281DRAFT_02163at 302.751 kb on - strand, within H281DRAFT_02163at 302.870 kb on + strand, within H281DRAFT_02163at 302.871 kb on - strand, within H281DRAFT_02163at 303.255 kb on - strandat 303.297 kb on + strandat 303.500 kb on + strandat 303.645 kb on - strand, within H281DRAFT_02164at 303.645 kb on - strand, within H281DRAFT_02164at 303.645 kb on - strand, within H281DRAFT_02164at 303.666 kb on + strand, within H281DRAFT_02164at 303.681 kb on + strand, within H281DRAFT_02164at 303.681 kb on + strand, within H281DRAFT_02164at 303.681 kb on + strand, within H281DRAFT_02164at 303.682 kb on - strand, within H281DRAFT_02164at 303.683 kb on + strand, within H281DRAFT_02164at 303.683 kb on + strand, within H281DRAFT_02164at 303.684 kb on - strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strandat 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.738 kb on + strand, within H281DRAFT_02164at 303.739 kb on - strand, within H281DRAFT_02164at 303.739 kb on - strand, within H281DRAFT_02164at 303.739 kb on - strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.900 kb on + strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strandat 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.901 kb on - strand, within H281DRAFT_02164at 303.902 kb on + strand, within H281DRAFT_02164at 303.902 kb on + strand, within H281DRAFT_02164at 303.903 kb on - strand, within H281DRAFT_02164at 303.903 kb on - strand, within H281DRAFT_02164at 303.943 kb on - strand, within H281DRAFT_02164at 303.946 kb on - strand, within H281DRAFT_02164at 304.012 kb on - strand, within H281DRAFT_02164at 304.101 kb on + strand, within H281DRAFT_02164at 304.102 kb on - strand, within H281DRAFT_02164at 304.146 kb on + strandat 304.147 kb on - strandat 304.149 kb on - strandat 304.209 kb on + strandat 304.209 kb on + strandat 304.380 kb on - strandat 304.424 kb on - strandat 304.431 kb on + strandat 304.431 kb on + strandat 304.431 kb on + strandat 304.432 kb on - strandat 304.566 kb on + strand, within H281DRAFT_02165at 304.567 kb on - strand, within H281DRAFT_02165at 304.567 kb on - strand, within H281DRAFT_02165at 304.689 kb on + strand, within H281DRAFT_02165at 304.860 kb on + strand, within H281DRAFT_02165at 304.860 kb on + strand, within H281DRAFT_02165at 304.862 kb on + strand, within H281DRAFT_02165at 304.862 kb on + strand, within H281DRAFT_02165at 304.862 kb on + strand, within H281DRAFT_02165at 304.863 kb on - strand, within H281DRAFT_02165at 304.863 kb on - strand, within H281DRAFT_02165at 304.863 kb on - strand, within H281DRAFT_02165at 304.913 kb on + strand, within H281DRAFT_02165at 304.914 kb on - strand, within H281DRAFT_02165at 304.914 kb on - strand, within H281DRAFT_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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302,646 + H281DRAFT_02163 0.49 -0.1
302,746 + H281DRAFT_02163 0.58 +2.0
302,746 + H281DRAFT_02163 0.58 +0.2
302,746 + H281DRAFT_02163 0.58 +0.6
302,747 - H281DRAFT_02163 0.58 -1.3
302,747 - H281DRAFT_02163 0.58 +0.7
302,750 + H281DRAFT_02163 0.58 +0.2
302,750 + H281DRAFT_02163 0.58 +1.9
302,750 + H281DRAFT_02163 0.58 -0.0
302,750 + H281DRAFT_02163 0.58 +0.0
302,750 + H281DRAFT_02163 0.58 +0.8
302,751 - H281DRAFT_02163 0.58 +0.8
302,870 + H281DRAFT_02163 0.69 -0.3
302,871 - H281DRAFT_02163 0.69 +0.4
303,255 - +0.9
303,297 + -1.2
303,500 + +0.1
303,645 - H281DRAFT_02164 0.19 +0.1
303,645 - H281DRAFT_02164 0.19 -1.8
303,645 - H281DRAFT_02164 0.19 -0.5
303,666 + H281DRAFT_02164 0.22 +0.6
303,681 + H281DRAFT_02164 0.24 +0.3
303,681 + H281DRAFT_02164 0.24 +0.0
303,681 + H281DRAFT_02164 0.24 +0.6
303,682 - H281DRAFT_02164 0.24 +1.0
303,683 + H281DRAFT_02164 0.24 -1.0
303,683 + H281DRAFT_02164 0.24 +0.9
303,684 - H281DRAFT_02164 0.24 -0.5
303,738 + H281DRAFT_02164 0.32 +1.6
303,738 + H281DRAFT_02164 0.32 +0.1
303,738 + H281DRAFT_02164 0.32 +0.3
303,738 + H281DRAFT_02164 0.32 +0.4
303,738 + +0.5
303,738 + H281DRAFT_02164 0.32 -0.9
303,738 + H281DRAFT_02164 0.32 -0.3
303,738 + H281DRAFT_02164 0.32 -0.7
303,739 - H281DRAFT_02164 0.32 -0.7
303,739 - H281DRAFT_02164 0.32 -0.3
303,739 - H281DRAFT_02164 0.32 -0.2
303,900 + H281DRAFT_02164 0.55 +0.5
303,900 + H281DRAFT_02164 0.55 +0.3
303,900 + H281DRAFT_02164 0.55 +0.4
303,900 + H281DRAFT_02164 0.55 +0.5
303,900 + H281DRAFT_02164 0.55 +0.5
303,900 + H281DRAFT_02164 0.55 -0.4
303,900 + H281DRAFT_02164 0.55 +0.4
303,900 + H281DRAFT_02164 0.55 -0.0
303,900 + H281DRAFT_02164 0.55 -0.6
303,900 + H281DRAFT_02164 0.55 +0.2
303,900 + H281DRAFT_02164 0.55 -0.1
303,900 + H281DRAFT_02164 0.55 -0.2
303,900 + H281DRAFT_02164 0.55 -0.1
303,901 - H281DRAFT_02164 0.56 +2.0
303,901 - H281DRAFT_02164 0.56 -0.0
303,901 - H281DRAFT_02164 0.56 -1.1
303,901 - H281DRAFT_02164 0.56 +0.2
303,901 - H281DRAFT_02164 0.56 +0.1
303,901 - H281DRAFT_02164 0.56 +0.4
303,901 - H281DRAFT_02164 0.56 +0.1
303,901 - H281DRAFT_02164 0.56 -0.7
303,901 - H281DRAFT_02164 0.56 +1.0
303,901 - +2.4
303,901 - H281DRAFT_02164 0.56 -0.1
303,901 - H281DRAFT_02164 0.56 -0.2
303,901 - H281DRAFT_02164 0.56 +0.7
303,901 - H281DRAFT_02164 0.56 +0.7
303,901 - H281DRAFT_02164 0.56 +0.3
303,901 - H281DRAFT_02164 0.56 +0.2
303,902 + H281DRAFT_02164 0.56 -0.0
303,902 + H281DRAFT_02164 0.56 -0.3
303,903 - H281DRAFT_02164 0.56 +0.7
303,903 - H281DRAFT_02164 0.56 -2.0
303,943 - H281DRAFT_02164 0.62 +0.1
303,946 - H281DRAFT_02164 0.62 +0.2
304,012 - H281DRAFT_02164 0.71 +0.2
304,101 + H281DRAFT_02164 0.84 +0.0
304,102 - H281DRAFT_02164 0.84 -0.5
304,146 + -0.9
304,147 - -0.5
304,149 - -0.2
304,209 + +0.3
304,209 + +0.6
304,380 - -0.2
304,424 - +0.5
304,431 + +0.2
304,431 + +0.3
304,431 + -0.1
304,432 - -0.4
304,566 + H281DRAFT_02165 0.15 -0.7
304,567 - H281DRAFT_02165 0.15 -0.5
304,567 - H281DRAFT_02165 0.15 -0.4
304,689 + H281DRAFT_02165 0.22 +0.4
304,860 + H281DRAFT_02165 0.33 +0.6
304,860 + H281DRAFT_02165 0.33 +1.3
304,862 + H281DRAFT_02165 0.33 +0.8
304,862 + H281DRAFT_02165 0.33 -0.5
304,862 + H281DRAFT_02165 0.33 +0.3
304,863 - H281DRAFT_02165 0.33 -0.3
304,863 - H281DRAFT_02165 0.33 +0.1
304,863 - H281DRAFT_02165 0.33 -0.5
304,913 + H281DRAFT_02165 0.36 -0.5
304,914 - H281DRAFT_02165 0.36 +0.3
304,914 - H281DRAFT_02165 0.36 +0.3

Or see this region's nucleotide sequence