Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02054

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02052 and H281DRAFT_02053 overlap by 29 nucleotidesH281DRAFT_02053 and H281DRAFT_02054 are separated by 12 nucleotidesH281DRAFT_02054 and H281DRAFT_02055 are separated by 334 nucleotidesH281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotides H281DRAFT_02052: H281DRAFT_02052 - hypothetical protein, at 175,682 to 175,951 _02052 H281DRAFT_02053: H281DRAFT_02053 - D-alanine transaminase, at 175,923 to 176,873 _02053 H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115 _02054 H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094 _02055 H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426 _02056 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 175.920 kb on + strand, within H281DRAFT_02052at 175.928 kb on + strandat 175.929 kb on - strandat 175.996 kb on + strandat 175.997 kb on - strandat 175.997 kb on - strandat 175.997 kb on - strandat 176.005 kb on + strandat 176.006 kb on - strandat 176.241 kb on + strand, within H281DRAFT_02053at 176.241 kb on + strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.339 kb on - strand, within H281DRAFT_02053at 176.339 kb on - strand, within H281DRAFT_02053at 176.548 kb on + strand, within H281DRAFT_02053at 176.549 kb on - strand, within H281DRAFT_02053at 176.734 kb on + strand, within H281DRAFT_02053at 176.735 kb on - strand, within H281DRAFT_02053at 176.736 kb on + strand, within H281DRAFT_02053at 176.737 kb on - strand, within H281DRAFT_02053at 176.752 kb on + strand, within H281DRAFT_02053at 176.753 kb on - strand, within H281DRAFT_02053at 176.834 kb on - strandat 177.115 kb on + strandat 177.115 kb on + strand, within H281DRAFT_02054at 177.116 kb on - strand, within H281DRAFT_02054at 177.116 kb on - strand, within H281DRAFT_02054at 177.199 kb on + strand, within H281DRAFT_02054at 177.200 kb on - strand, within H281DRAFT_02054at 177.200 kb on - strand, within H281DRAFT_02054at 177.227 kb on - strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.454 kb on + strand, within H281DRAFT_02054at 177.454 kb on + strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.487 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.712 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054at 178.051 kb on - strandat 178.116 kb on - strandat 178.116 kb on - strandat 178.134 kb on + strandat 178.134 kb on + strandat 178.134 kb on + strandat 178.135 kb on - strandat 178.135 kb on - strandat 178.135 kb on - strandat 178.136 kb on + strandat 178.201 kb on - strandat 178.265 kb on + strandat 178.298 kb on - strandat 178.353 kb on + strandat 178.353 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.356 kb on - strandat 178.356 kb on - strandat 178.364 kb on + strandat 178.415 kb on - strandat 178.420 kb on + strandat 178.485 kb on + strandat 178.883 kb on + strand, within H281DRAFT_02055at 178.883 kb on + strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.892 kb on + strand, within H281DRAFT_02055at 179.072 kb on + strandat 179.072 kb on - strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.083 kb on - strandat 179.083 kb on - strandat 179.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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175,920 + H281DRAFT_02052 0.88 -0.1
175,928 + +1.0
175,929 - +0.2
175,996 + -1.8
175,997 - -0.8
175,997 - -0.0
175,997 - +0.2
176,005 + -0.2
176,006 - -0.2
176,241 + H281DRAFT_02053 0.33 -0.1
176,241 + H281DRAFT_02053 0.33 -0.6
176,242 - H281DRAFT_02053 0.34 +0.7
176,242 - H281DRAFT_02053 0.34 -0.7
176,242 - H281DRAFT_02053 0.34 +0.3
176,242 - H281DRAFT_02053 0.34 -0.2
176,339 - H281DRAFT_02053 0.44 +0.0
176,339 - H281DRAFT_02053 0.44 +0.1
176,548 + H281DRAFT_02053 0.66 -0.6
176,549 - H281DRAFT_02053 0.66 -0.2
176,734 + H281DRAFT_02053 0.85 +1.0
176,735 - H281DRAFT_02053 0.85 +0.3
176,736 + H281DRAFT_02053 0.85 +0.3
176,737 - H281DRAFT_02053 0.86 +0.9
176,752 + H281DRAFT_02053 0.87 +0.7
176,753 - H281DRAFT_02053 0.87 +0.1
176,834 - +0.3
177,115 + +1.0
177,115 + H281DRAFT_02054 0.19 +0.5
177,116 - H281DRAFT_02054 0.19 +0.8
177,116 - H281DRAFT_02054 0.19 +2.2
177,199 + H281DRAFT_02054 0.25 +2.7
177,200 - H281DRAFT_02054 0.26 +0.1
177,200 - H281DRAFT_02054 0.26 +1.6
177,227 - H281DRAFT_02054 0.28 +1.0
177,232 + H281DRAFT_02054 0.28 +2.3
177,232 + H281DRAFT_02054 0.28 -1.3
177,232 + H281DRAFT_02054 0.28 +1.1
177,233 - H281DRAFT_02054 0.28 -0.2
177,233 - H281DRAFT_02054 0.28 +0.3
177,233 - H281DRAFT_02054 0.28 +0.0
177,454 + H281DRAFT_02054 0.46 -0.3
177,454 + H281DRAFT_02054 0.46 +0.8
177,455 - H281DRAFT_02054 0.46 +0.9
177,455 - H281DRAFT_02054 0.46 -0.1
177,484 + H281DRAFT_02054 0.49 +0.6
177,484 + H281DRAFT_02054 0.49 +0.1
177,484 + H281DRAFT_02054 0.49 -0.1
177,485 - H281DRAFT_02054 0.49 +0.1
177,485 - H281DRAFT_02054 0.49 +1.0
177,487 + H281DRAFT_02054 0.49 +0.9
177,547 + H281DRAFT_02054 0.54 -1.6
177,547 + H281DRAFT_02054 0.54 +1.6
177,548 - H281DRAFT_02054 0.54 +0.1
177,548 - H281DRAFT_02054 0.54 +0.4
177,548 - H281DRAFT_02054 0.54 -0.3
177,712 + H281DRAFT_02054 0.67 +0.2
177,856 + H281DRAFT_02054 0.79 -0.5
177,856 + H281DRAFT_02054 0.79 +0.5
178,051 - +0.1
178,116 - +0.8
178,116 - +1.0
178,134 + -1.1
178,134 + -0.3
178,134 + +0.2
178,135 - +0.4
178,135 - -0.3
178,135 - +0.4
178,136 + +0.9
178,201 - -1.9
178,265 + +0.3
178,298 - +0.4
178,353 + +0.6
178,353 + -0.1
178,355 + -0.1
178,355 + +0.9
178,355 + -0.2
178,355 + -0.2
178,355 + +0.2
178,356 - +0.1
178,356 - -1.3
178,364 + +1.0
178,415 - -0.0
178,420 + -0.0
178,485 + +1.0
178,883 + H281DRAFT_02055 0.67 -0.6
178,883 + H281DRAFT_02055 0.67 +0.9
178,884 - H281DRAFT_02055 0.67 -0.3
178,884 - H281DRAFT_02055 0.67 -0.7
178,884 - H281DRAFT_02055 0.67 -0.1
178,892 + H281DRAFT_02055 0.69 -0.8
179,072 + -0.8
179,072 - -0.4
179,082 + -0.1
179,082 + -0.8
179,082 + -1.0
179,083 - +0.7
179,083 - -0.0
179,104 + -0.1

Or see this region's nucleotide sequence