Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01985

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01983 and H281DRAFT_01984 are separated by 33 nucleotidesH281DRAFT_01984 and H281DRAFT_01985 are separated by 4 nucleotidesH281DRAFT_01985 and H281DRAFT_01986 are separated by 6 nucleotides H281DRAFT_01983: H281DRAFT_01983 - Uncharacterized conserved protein YciI, contains a putative active-site phosphohistidine, at 103,666 to 103,956 _01983 H281DRAFT_01984: H281DRAFT_01984 - protein SCO1/2, at 103,990 to 104,607 _01984 H281DRAFT_01985: H281DRAFT_01985 - protoheme IX farnesyltransferase, at 104,612 to 105,517 _01985 H281DRAFT_01986: H281DRAFT_01986 - cytochrome c oxidase assembly protein subunit 15, at 105,524 to 106,633 _01986 Position (kb) 104 105 106Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 103.640 kb on - strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.669 kb on + strandat 103.670 kb on - strandat 103.670 kb on - strandat 103.670 kb on - strandat 103.670 kb on - strandat 103.670 kb on - strandat 103.687 kb on + strandat 103.688 kb on - strandat 103.688 kb on - strandat 103.974 kb on + strandat 103.974 kb on + strandat 103.974 kb on + strandat 103.974 kb on + strandat 103.975 kb on - strandat 103.975 kb on - strandat 103.975 kb on - strandat 103.975 kb on - strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.979 kb on - strandat 103.979 kb on - strandat 104.084 kb on + strand, within H281DRAFT_01984at 104.084 kb on + strand, within H281DRAFT_01984at 104.084 kb on + strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.085 kb on - strand, within H281DRAFT_01984at 104.111 kb on + strand, within H281DRAFT_01984at 104.144 kb on + strand, within H281DRAFT_01984at 104.148 kb on - strand, within H281DRAFT_01984at 104.207 kb on - strand, within H281DRAFT_01984at 104.234 kb on + strand, within H281DRAFT_01984at 104.235 kb on - strand, within H281DRAFT_01984at 104.235 kb on - strand, within H281DRAFT_01984at 104.235 kb on - strand, within H281DRAFT_01984at 104.287 kb on + strand, within H281DRAFT_01984at 104.288 kb on - strand, within H281DRAFT_01984at 104.414 kb on + strandat 104.415 kb on - strand, within H281DRAFT_01984at 104.610 kb on + strandat 104.611 kb on - strandat 104.611 kb on - strandat 104.613 kb on + strandat 104.637 kb on + strandat 104.638 kb on - strandat 104.676 kb on + strandat 104.731 kb on - strand, within H281DRAFT_01985at 104.731 kb on - strand, within H281DRAFT_01985at 104.788 kb on - strand, within H281DRAFT_01985at 104.824 kb on + strand, within H281DRAFT_01985at 104.843 kb on + strand, within H281DRAFT_01985at 104.843 kb on + strand, within H281DRAFT_01985at 104.844 kb on - strand, within H281DRAFT_01985at 104.844 kb on - strand, within H281DRAFT_01985at 104.844 kb on - strand, within H281DRAFT_01985at 104.844 kb on - strand, within H281DRAFT_01985at 104.850 kb on + strand, within H281DRAFT_01985at 104.861 kb on - strand, within H281DRAFT_01985at 104.861 kb on - strand, within H281DRAFT_01985at 104.875 kb on - strand, within H281DRAFT_01985at 104.875 kb on - strand, within H281DRAFT_01985at 104.938 kb on - strand, within H281DRAFT_01985at 105.112 kb on + strand, within H281DRAFT_01985at 105.114 kb on + strand, within H281DRAFT_01985at 105.114 kb on + strandat 105.114 kb on + strand, within H281DRAFT_01985at 105.114 kb on + strand, within H281DRAFT_01985at 105.114 kb on + strand, within H281DRAFT_01985at 105.114 kb on + strand, within H281DRAFT_01985at 105.115 kb on - strand, within H281DRAFT_01985at 105.468 kb on + strandat 105.468 kb on + strandat 105.493 kb on + strandat 105.576 kb on + strandat 105.577 kb on - strandat 105.598 kb on + strandat 105.599 kb on - strandat 105.599 kb on - strandat 105.641 kb on + strand, within H281DRAFT_01986at 105.642 kb on - strand, within H281DRAFT_01986at 105.650 kb on - strand, within H281DRAFT_01986at 105.950 kb on - strand, within H281DRAFT_01986at 105.966 kb on + strand, within H281DRAFT_01986at 105.966 kb on + strand, within H281DRAFT_01986at 105.966 kb on + strand, within H281DRAFT_01986at 105.967 kb on - strand, within H281DRAFT_01986at 105.967 kb on - strand, within H281DRAFT_01986at 106.062 kb on + strand, within H281DRAFT_01986at 106.434 kb on + strand, within H281DRAFT_01986at 106.434 kb on + strand, within H281DRAFT_01986

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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103,640 - -0.2
103,669 + -0.5
103,669 + +0.1
103,669 + +0.2
103,669 + -0.2
103,669 + -0.1
103,669 + +0.2
103,669 + +0.4
103,670 - -2.2
103,670 - +0.2
103,670 - -0.1
103,670 - -0.6
103,670 - +0.1
103,687 + +0.5
103,688 - +0.8
103,688 - -0.1
103,974 + +1.0
103,974 + +0.3
103,974 + +0.3
103,974 + -0.1
103,975 - -0.3
103,975 - +1.5
103,975 - +1.1
103,975 - -0.1
103,978 + -0.4
103,978 + +0.0
103,978 + -0.1
103,979 - -1.2
103,979 - +0.2
104,084 + H281DRAFT_01984 0.15 +1.1
104,084 + H281DRAFT_01984 0.15 +1.0
104,084 + H281DRAFT_01984 0.15 +0.5
104,085 - H281DRAFT_01984 0.15 +0.5
104,085 - H281DRAFT_01984 0.15 -0.2
104,085 - H281DRAFT_01984 0.15 +0.4
104,085 - H281DRAFT_01984 0.15 +0.3
104,085 - H281DRAFT_01984 0.15 -0.5
104,085 - H281DRAFT_01984 0.15 +0.2
104,085 - H281DRAFT_01984 0.15 +1.2
104,085 - H281DRAFT_01984 0.15 +0.5
104,085 - H281DRAFT_01984 0.15 +0.8
104,111 + H281DRAFT_01984 0.20 +0.2
104,144 + H281DRAFT_01984 0.25 -0.4
104,148 - H281DRAFT_01984 0.26 +0.2
104,207 - H281DRAFT_01984 0.35 +0.8
104,234 + H281DRAFT_01984 0.39 +0.7
104,235 - H281DRAFT_01984 0.40 +0.1
104,235 - H281DRAFT_01984 0.40 +0.1
104,235 - H281DRAFT_01984 0.40 -0.4
104,287 + H281DRAFT_01984 0.48 +0.9
104,288 - H281DRAFT_01984 0.48 +0.3
104,414 + +2.6
104,415 - H281DRAFT_01984 0.69 +1.9
104,610 + +3.0
104,611 - +0.1
104,611 - +2.6
104,613 + +1.9
104,637 + -0.2
104,638 - +0.6
104,676 + -1.9
104,731 - H281DRAFT_01985 0.13 -2.4
104,731 - H281DRAFT_01985 0.13 -0.8
104,788 - H281DRAFT_01985 0.19 -1.8
104,824 + H281DRAFT_01985 0.23 -1.0
104,843 + H281DRAFT_01985 0.25 -2.0
104,843 + H281DRAFT_01985 0.25 -2.8
104,844 - H281DRAFT_01985 0.26 -0.9
104,844 - H281DRAFT_01985 0.26 -1.1
104,844 - H281DRAFT_01985 0.26 -4.3
104,844 - H281DRAFT_01985 0.26 -1.5
104,850 + H281DRAFT_01985 0.26 -2.4
104,861 - H281DRAFT_01985 0.27 -1.6
104,861 - H281DRAFT_01985 0.27 -1.6
104,875 - H281DRAFT_01985 0.29 -2.7
104,875 - H281DRAFT_01985 0.29 +1.6
104,938 - H281DRAFT_01985 0.36 +0.3
105,112 + H281DRAFT_01985 0.55 -2.6
105,114 + H281DRAFT_01985 0.55 -3.0
105,114 + +1.0
105,114 + H281DRAFT_01985 0.55 -0.6
105,114 + H281DRAFT_01985 0.55 -3.6
105,114 + H281DRAFT_01985 0.55 -2.5
105,114 + H281DRAFT_01985 0.55 -2.0
105,115 - H281DRAFT_01985 0.56 +0.0
105,468 + -1.3
105,468 + -2.4
105,493 + -2.7
105,576 + -2.0
105,577 - +0.3
105,598 + +0.2
105,599 - -0.5
105,599 - +0.5
105,641 + H281DRAFT_01986 0.11 -2.1
105,642 - H281DRAFT_01986 0.11 -1.6
105,650 - H281DRAFT_01986 0.11 -0.6
105,950 - H281DRAFT_01986 0.38 -0.7
105,966 + H281DRAFT_01986 0.40 -1.2
105,966 + H281DRAFT_01986 0.40 -1.3
105,966 + H281DRAFT_01986 0.40 -0.6
105,967 - H281DRAFT_01986 0.40 -0.8
105,967 - H281DRAFT_01986 0.40 -0.9
106,062 + H281DRAFT_01986 0.48 -1.1
106,434 + H281DRAFT_01986 0.82 -0.6
106,434 + H281DRAFT_01986 0.82 -1.7

Or see this region's nucleotide sequence