Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01450

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01449 and H281DRAFT_01450 are separated by 40 nucleotidesH281DRAFT_01450 and H281DRAFT_01451 are separated by 50 nucleotides H281DRAFT_01449: H281DRAFT_01449 - RIO kinase 1, at 312,678 to 313,535 _01449 H281DRAFT_01450: H281DRAFT_01450 - transcriptional regulator, LacI family, at 313,576 to 314,628 _01450 H281DRAFT_01451: H281DRAFT_01451 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 314,679 to 315,926 _01451 Position (kb) 313 314 315Strain fitness (log2 ratio) -2 -1 0 1 2 3at 312.587 kb on + strandat 312.707 kb on - strandat 312.813 kb on + strand, within H281DRAFT_01449at 313.095 kb on - strand, within H281DRAFT_01449at 313.152 kb on - strand, within H281DRAFT_01449at 313.191 kb on + strand, within H281DRAFT_01449at 313.191 kb on + strand, within H281DRAFT_01449at 313.534 kb on - strandat 313.782 kb on - strand, within H281DRAFT_01450at 314.411 kb on + strand, within H281DRAFT_01450at 314.412 kb on - strand, within H281DRAFT_01450at 314.565 kb on + strandat 314.923 kb on - strand, within H281DRAFT_01451at 315.131 kb on - strand, within H281DRAFT_01451at 315.229 kb on + strandat 315.230 kb on - strand, within H281DRAFT_01451at 315.544 kb on + strand, within H281DRAFT_01451at 315.556 kb on - strand, within H281DRAFT_01451

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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312,587 + -0.7
312,707 - +1.2
312,813 + H281DRAFT_01449 0.16 -0.4
313,095 - H281DRAFT_01449 0.49 -0.5
313,152 - H281DRAFT_01449 0.55 -0.8
313,191 + H281DRAFT_01449 0.60 -1.0
313,191 + H281DRAFT_01449 0.60 -2.2
313,534 - +0.7
313,782 - H281DRAFT_01450 0.20 +0.6
314,411 + H281DRAFT_01450 0.79 +0.3
314,412 - H281DRAFT_01450 0.79 +0.2
314,565 + -1.0
314,923 - H281DRAFT_01451 0.20 +0.6
315,131 - H281DRAFT_01451 0.36 +1.8
315,229 + +2.8
315,230 - H281DRAFT_01451 0.44 +0.6
315,544 + H281DRAFT_01451 0.69 -0.6
315,556 - H281DRAFT_01451 0.70 +0.5

Or see this region's nucleotide sequence