Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01224

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01223 and H281DRAFT_01224 are separated by 61 nucleotidesH281DRAFT_01224 and H281DRAFT_01225 are separated by 42 nucleotidesH281DRAFT_01225 and H281DRAFT_01226 are separated by 127 nucleotides H281DRAFT_01223: H281DRAFT_01223 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 61,087 to 62,616 _01223 H281DRAFT_01224: H281DRAFT_01224 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 62,678 to 63,571 _01224 H281DRAFT_01225: H281DRAFT_01225 - L-rhamnose mutarotase, at 63,614 to 63,937 _01225 H281DRAFT_01226: H281DRAFT_01226 - transcriptional regulator, LysR family, at 64,065 to 65,060 _01226 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1at 62.017 kb on + strand, within H281DRAFT_01223at 62.039 kb on - strand, within H281DRAFT_01223at 62.760 kb on + strandat 62.866 kb on - strand, within H281DRAFT_01224at 63.683 kb on - strand, within H281DRAFT_01225at 63.703 kb on - strand, within H281DRAFT_01225at 63.993 kb on - strandat 63.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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62,017 + H281DRAFT_01223 0.61 +0.2
62,039 - H281DRAFT_01223 0.62 +1.4
62,760 + -0.2
62,866 - H281DRAFT_01224 0.21 +0.6
63,683 - H281DRAFT_01225 0.21 +0.3
63,703 - H281DRAFT_01225 0.27 +0.1
63,993 - -0.2
63,993 - +1.0

Or see this region's nucleotide sequence