Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01102

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01101 and H281DRAFT_01102 are separated by 62 nucleotidesH281DRAFT_01102 and H281DRAFT_01103 are separated by 363 nucleotides H281DRAFT_01101: H281DRAFT_01101 - Small-conductance mechanosensitive channel, at 1,236,497 to 1,237,966 _01101 H281DRAFT_01102: H281DRAFT_01102 - hypothetical protein, at 1,238,029 to 1,239,900 _01102 H281DRAFT_01103: H281DRAFT_01103 - starvation-inducible DNA-binding protein, at 1,240,264 to 1,240,782 _01103 Position (kb) 1238 1239 1240Strain fitness (log2 ratio) -1 0 1 2at 1237.090 kb on - strand, within H281DRAFT_01101at 1237.830 kb on + strandat 1237.939 kb on - strandat 1238.190 kb on - strandat 1238.303 kb on - strand, within H281DRAFT_01102at 1238.345 kb on + strandat 1238.487 kb on - strand, within H281DRAFT_01102at 1239.095 kb on + strand, within H281DRAFT_01102at 1239.096 kb on - strandat 1239.291 kb on - strandat 1239.437 kb on + strand, within H281DRAFT_01102at 1240.025 kb on + strandat 1240.032 kb on + strandat 1240.185 kb on + strandat 1240.212 kb on - strandat 1240.394 kb on - strand, within H281DRAFT_01103at 1240.422 kb on + strand, within H281DRAFT_01103at 1240.423 kb on - strand, within H281DRAFT_01103at 1240.447 kb on + strand, within H281DRAFT_01103at 1240.573 kb on - strand, within H281DRAFT_01103at 1240.640 kb on + strand, within H281DRAFT_01103at 1240.641 kb on - strand, within H281DRAFT_01103

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,237,090 - H281DRAFT_01101 0.40 +2.0
1,237,830 + +2.2
1,237,939 - -1.0
1,238,190 - -0.0
1,238,303 - H281DRAFT_01102 0.15 -0.2
1,238,345 + +0.6
1,238,487 - H281DRAFT_01102 0.24 +0.9
1,239,095 + H281DRAFT_01102 0.57 +1.4
1,239,096 - -0.7
1,239,291 - -0.1
1,239,437 + H281DRAFT_01102 0.75 +0.6
1,240,025 + +0.3
1,240,032 + +0.6
1,240,185 + +0.6
1,240,212 - -0.4
1,240,394 - H281DRAFT_01103 0.25 +0.1
1,240,422 + H281DRAFT_01103 0.30 +0.2
1,240,423 - H281DRAFT_01103 0.31 +0.3
1,240,447 + H281DRAFT_01103 0.35 -1.5
1,240,573 - H281DRAFT_01103 0.60 -0.1
1,240,640 + H281DRAFT_01103 0.72 +0.2
1,240,641 - H281DRAFT_01103 0.73 +0.3

Or see this region's nucleotide sequence