Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00972

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00971 and H281DRAFT_00972 are separated by 270 nucleotidesH281DRAFT_00972 and H281DRAFT_00973 are separated by 160 nucleotides H281DRAFT_00971: H281DRAFT_00971 - Outer membrane protein (porin), at 1,087,430 to 1,088,599 _00971 H281DRAFT_00972: H281DRAFT_00972 - lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase, at 1,088,870 to 1,090,315 _00972 H281DRAFT_00973: H281DRAFT_00973 - Sugar phosphate permease, at 1,090,476 to 1,091,840 _00973 Position (kb) 1088 1089 1090 1091Strain fitness (log2 ratio) -1 0 1 2at 1088.019 kb on + strand, within H281DRAFT_00971at 1088.019 kb on + strand, within H281DRAFT_00971at 1088.103 kb on + strand, within H281DRAFT_00971at 1088.246 kb on - strand, within H281DRAFT_00971at 1088.280 kb on + strand, within H281DRAFT_00971at 1088.280 kb on + strand, within H281DRAFT_00971at 1089.343 kb on + strand, within H281DRAFT_00972at 1089.743 kb on + strand, within H281DRAFT_00972at 1090.122 kb on - strand, within H281DRAFT_00972at 1090.123 kb on + strand, within H281DRAFT_00972at 1090.181 kb on + strandat 1090.346 kb on - strandat 1090.662 kb on + strand, within H281DRAFT_00973at 1091.110 kb on - strand, within H281DRAFT_00973

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
1,088,019 + H281DRAFT_00971 0.50 -0.0
1,088,019 + H281DRAFT_00971 0.50 -0.1
1,088,103 + H281DRAFT_00971 0.58 +1.2
1,088,246 - H281DRAFT_00971 0.70 +0.6
1,088,280 + H281DRAFT_00971 0.73 +1.9
1,088,280 + H281DRAFT_00971 0.73 +2.5
1,089,343 + H281DRAFT_00972 0.33 +0.8
1,089,743 + H281DRAFT_00972 0.60 +1.6
1,090,122 - H281DRAFT_00972 0.87 +1.7
1,090,123 + H281DRAFT_00972 0.87 -1.7
1,090,181 + -0.2
1,090,346 - -0.9
1,090,662 + H281DRAFT_00973 0.14 +0.5
1,091,110 - H281DRAFT_00973 0.46 -0.1

Or see this region's nucleotide sequence