Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00840

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00839 and H281DRAFT_00840 are separated by 209 nucleotidesH281DRAFT_00840 and H281DRAFT_00841 overlap by 86 nucleotidesH281DRAFT_00841 and H281DRAFT_00842 are separated by 31 nucleotides H281DRAFT_00839: H281DRAFT_00839 - NADPH2:quinone reductase, at 929,027 to 930,001 _00839 H281DRAFT_00840: H281DRAFT_00840 - 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase, at 930,211 to 930,969 _00840 H281DRAFT_00841: H281DRAFT_00841 - hypothetical protein, at 930,884 to 931,456 _00841 H281DRAFT_00842: H281DRAFT_00842 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 931,488 to 932,102 _00842 Position (kb) 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1at 929.301 kb on + strand, within H281DRAFT_00839at 929.341 kb on + strand, within H281DRAFT_00839at 929.343 kb on + strand, within H281DRAFT_00839at 929.343 kb on + strand, within H281DRAFT_00839at 929.344 kb on - strand, within H281DRAFT_00839at 929.365 kb on - strand, within H281DRAFT_00839at 929.431 kb on - strand, within H281DRAFT_00839at 929.564 kb on + strand, within H281DRAFT_00839at 929.850 kb on + strand, within H281DRAFT_00839at 929.850 kb on + strand, within H281DRAFT_00839at 929.850 kb on + strand, within H281DRAFT_00839at 929.850 kb on + strand, within H281DRAFT_00839at 929.850 kb on + strand, within H281DRAFT_00839at 929.952 kb on - strandat 929.952 kb on - strandat 929.977 kb on - strandat 930.043 kb on - strandat 930.061 kb on + strandat 930.062 kb on - strandat 930.067 kb on + strandat 930.068 kb on - strandat 930.068 kb on - strandat 930.200 kb on - strandat 930.221 kb on + strandat 930.222 kb on - strandat 930.242 kb on - strandat 930.242 kb on - strandat 930.269 kb on - strandat 930.392 kb on - strand, within H281DRAFT_00840at 930.392 kb on - strand, within H281DRAFT_00840at 930.394 kb on + strand, within H281DRAFT_00840at 930.395 kb on - strand, within H281DRAFT_00840at 930.514 kb on + strand, within H281DRAFT_00840at 930.514 kb on + strand, within H281DRAFT_00840at 930.514 kb on - strand, within H281DRAFT_00840at 930.515 kb on - strandat 930.646 kb on + strand, within H281DRAFT_00840at 930.729 kb on + strand, within H281DRAFT_00840at 930.730 kb on - strand, within H281DRAFT_00840at 930.780 kb on + strand, within H281DRAFT_00840at 930.803 kb on - strand, within H281DRAFT_00840at 930.803 kb on - strand, within H281DRAFT_00840at 930.838 kb on - strand, within H281DRAFT_00840at 931.054 kb on + strand, within H281DRAFT_00841at 931.054 kb on + strand, within H281DRAFT_00841at 931.634 kb on + strand, within H281DRAFT_00842at 931.634 kb on + strand, within H281DRAFT_00842at 931.767 kb on + strand, within H281DRAFT_00842at 931.768 kb on - strand, within H281DRAFT_00842at 931.768 kb on - strand, within H281DRAFT_00842at 931.851 kb on + strandat 931.852 kb on - strand, within H281DRAFT_00842at 931.939 kb on + strand, within H281DRAFT_00842at 931.940 kb on - strand, within H281DRAFT_00842at 931.940 kb on - strand, within H281DRAFT_00842

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
929,301 + H281DRAFT_00839 0.28 +1.3
929,341 + H281DRAFT_00839 0.32 +1.5
929,343 + H281DRAFT_00839 0.32 +0.2
929,343 + H281DRAFT_00839 0.32 -0.4
929,344 - H281DRAFT_00839 0.33 +0.3
929,365 - H281DRAFT_00839 0.35 +0.3
929,431 - H281DRAFT_00839 0.41 +0.8
929,564 + H281DRAFT_00839 0.55 +0.5
929,850 + H281DRAFT_00839 0.84 -0.4
929,850 + H281DRAFT_00839 0.84 -1.1
929,850 + H281DRAFT_00839 0.84 -0.1
929,850 + H281DRAFT_00839 0.84 +0.4
929,850 + H281DRAFT_00839 0.84 -1.1
929,952 - +0.7
929,952 - +0.3
929,977 - -0.2
930,043 - +0.8
930,061 + +0.2
930,062 - -0.4
930,067 + -0.0
930,068 - -0.7
930,068 - +0.3
930,200 - -0.0
930,221 + +0.4
930,222 - -1.6
930,242 - -1.7
930,242 - -1.8
930,269 - -1.7
930,392 - H281DRAFT_00840 0.24 -2.0
930,392 - H281DRAFT_00840 0.24 +1.0
930,394 + H281DRAFT_00840 0.24 -0.1
930,395 - H281DRAFT_00840 0.24 -2.3
930,514 + H281DRAFT_00840 0.40 +0.8
930,514 + H281DRAFT_00840 0.40 -0.7
930,514 - H281DRAFT_00840 0.40 -1.2
930,515 - +0.6
930,646 + H281DRAFT_00840 0.57 -0.6
930,729 + H281DRAFT_00840 0.68 -1.1
930,730 - H281DRAFT_00840 0.68 -2.0
930,780 + H281DRAFT_00840 0.75 +0.6
930,803 - H281DRAFT_00840 0.78 -0.0
930,803 - H281DRAFT_00840 0.78 -2.2
930,838 - H281DRAFT_00840 0.83 -0.5
931,054 + H281DRAFT_00841 0.30 -2.6
931,054 + H281DRAFT_00841 0.30 -1.2
931,634 + H281DRAFT_00842 0.24 -0.2
931,634 + H281DRAFT_00842 0.24 -2.3
931,767 + H281DRAFT_00842 0.45 -1.6
931,768 - H281DRAFT_00842 0.46 -1.4
931,768 - H281DRAFT_00842 0.46 -0.4
931,851 + -1.0
931,852 - H281DRAFT_00842 0.59 -2.2
931,939 + H281DRAFT_00842 0.73 -3.0
931,940 - H281DRAFT_00842 0.73 -2.4
931,940 - H281DRAFT_00842 0.73 -0.9

Or see this region's nucleotide sequence