Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00376

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00375 and H281DRAFT_00376 are separated by 34 nucleotidesH281DRAFT_00376 and H281DRAFT_00377 are separated by 302 nucleotides H281DRAFT_00375: H281DRAFT_00375 - benzoyl-CoA oxygenase, component A, at 412,787 to 414,028 _00375 H281DRAFT_00376: H281DRAFT_00376 - transcriptional regulator, TetR family, at 414,063 to 414,803 _00376 H281DRAFT_00377: H281DRAFT_00377 - N-carbamoyl-L-amino-acid hydrolase, at 415,106 to 416,386 _00377 Position (kb) 414 415Strain fitness (log2 ratio) -1 0 1at 413.896 kb on - strand, within H281DRAFT_00375at 413.896 kb on - strand, within H281DRAFT_00375at 414.236 kb on + strand, within H281DRAFT_00376at 414.238 kb on + strand, within H281DRAFT_00376at 414.440 kb on - strand, within H281DRAFT_00376at 414.557 kb on - strand, within H281DRAFT_00376at 414.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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413,896 - H281DRAFT_00375 0.89 -0.2
413,896 - H281DRAFT_00375 0.89 -0.0
414,236 + H281DRAFT_00376 0.23 -0.1
414,238 + H281DRAFT_00376 0.24 -0.1
414,440 - H281DRAFT_00376 0.51 -1.4
414,557 - H281DRAFT_00376 0.67 -0.8
414,835 - -0.1

Or see this region's nucleotide sequence