Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00109

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00108 and H281DRAFT_00109 are separated by 30 nucleotidesH281DRAFT_00109 and H281DRAFT_00110 are separated by 62 nucleotides H281DRAFT_00108: H281DRAFT_00108 - Predicted dehydrogenase, at 113,024 to 114,175 _00108 H281DRAFT_00109: H281DRAFT_00109 - hypothetical protein, at 114,206 to 114,466 _00109 H281DRAFT_00110: H281DRAFT_00110 - hydrophobic/amphiphilic exporter-1, HAE1 family, at 114,529 to 117,723 _00110 Position (kb) 114 115Strain fitness (log2 ratio) -1 0 1at 113.425 kb on + strand, within H281DRAFT_00108at 113.425 kb on + strand, within H281DRAFT_00108at 113.425 kb on + strand, within H281DRAFT_00108at 113.425 kb on + strand, within H281DRAFT_00108at 113.430 kb on - strand, within H281DRAFT_00108at 113.493 kb on + strand, within H281DRAFT_00108at 113.772 kb on + strand, within H281DRAFT_00108at 113.773 kb on - strand, within H281DRAFT_00108at 113.811 kb on + strand, within H281DRAFT_00108at 114.005 kb on + strand, within H281DRAFT_00108at 114.008 kb on - strand, within H281DRAFT_00108at 114.285 kb on + strand, within H281DRAFT_00109at 114.286 kb on - strand, within H281DRAFT_00109at 114.286 kb on - strand, within H281DRAFT_00109at 114.495 kb on + strandat 114.630 kb on + strandat 114.744 kb on + strandat 114.745 kb on - strandat 114.745 kb on - strandat 114.973 kb on - strand, within H281DRAFT_00110at 114.973 kb on - strand, within H281DRAFT_00110at 115.041 kb on - strand, within H281DRAFT_00110

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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113,425 + H281DRAFT_00108 0.35 -0.2
113,425 + H281DRAFT_00108 0.35 -0.1
113,425 + H281DRAFT_00108 0.35 -0.4
113,425 + H281DRAFT_00108 0.35 -0.3
113,430 - H281DRAFT_00108 0.35 -0.3
113,493 + H281DRAFT_00108 0.41 -0.5
113,772 + H281DRAFT_00108 0.65 -0.4
113,773 - H281DRAFT_00108 0.65 +0.3
113,811 + H281DRAFT_00108 0.68 -0.2
114,005 + H281DRAFT_00108 0.85 -0.5
114,008 - H281DRAFT_00108 0.85 +0.2
114,285 + H281DRAFT_00109 0.30 -0.8
114,286 - H281DRAFT_00109 0.31 -1.2
114,286 - H281DRAFT_00109 0.31 -0.2
114,495 + -0.2
114,630 + +0.6
114,744 + +0.3
114,745 - +0.3
114,745 - +0.3
114,973 - H281DRAFT_00110 0.14 +0.1
114,973 - H281DRAFT_00110 0.14 +0.2
115,041 - H281DRAFT_00110 0.16 -0.2

Or see this region's nucleotide sequence