Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00068

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00067 and H281DRAFT_00068 are separated by 9 nucleotidesH281DRAFT_00068 and H281DRAFT_00069 are separated by 424 nucleotides H281DRAFT_00067: H281DRAFT_00067 - transposase, IS4 family, at 67,486 to 68,394 _00067 H281DRAFT_00068: H281DRAFT_00068 - Transposase, at 68,404 to 68,931 _00068 H281DRAFT_00069: H281DRAFT_00069 - hypothetical protein, at 69,356 to 70,066 _00069 Position (kb) 68 69Strain fitness (log2 ratio) -1 0 1at 67.443 kb on - strandat 67.464 kb on + strandat 67.492 kb on - strandat 67.559 kb on + strandat 67.729 kb on + strand, within H281DRAFT_00067at 67.990 kb on - strand, within H281DRAFT_00067at 68.027 kb on + strand, within H281DRAFT_00067at 68.028 kb on - strand, within H281DRAFT_00067at 68.187 kb on - strand, within H281DRAFT_00067at 68.287 kb on - strand, within H281DRAFT_00067at 68.406 kb on - strandat 68.720 kb on + strand, within H281DRAFT_00068at 68.721 kb on - strand, within H281DRAFT_00068at 68.721 kb on - strand, within H281DRAFT_00068at 68.726 kb on + strand, within H281DRAFT_00068at 68.726 kb on + strand, within H281DRAFT_00068at 68.727 kb on - strand, within H281DRAFT_00068at 68.728 kb on + strand, within H281DRAFT_00068at 68.893 kb on + strandat 68.964 kb on + strandat 69.218 kb on + strandat 69.250 kb on + strandat 69.251 kb on - strandat 69.266 kb on + strandat 69.489 kb on - strand, within H281DRAFT_00069

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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67,443 - -0.7
67,464 + +0.4
67,492 - -0.8
67,559 + +0.3
67,729 + H281DRAFT_00067 0.27 +0.6
67,990 - H281DRAFT_00067 0.55 -1.0
68,027 + H281DRAFT_00067 0.60 +0.3
68,028 - H281DRAFT_00067 0.60 -0.4
68,187 - H281DRAFT_00067 0.77 -0.9
68,287 - H281DRAFT_00067 0.88 -1.1
68,406 - +0.0
68,720 + H281DRAFT_00068 0.60 +0.2
68,721 - H281DRAFT_00068 0.60 -0.8
68,721 - H281DRAFT_00068 0.60 +0.1
68,726 + H281DRAFT_00068 0.61 +0.5
68,726 + H281DRAFT_00068 0.61 -0.9
68,727 - H281DRAFT_00068 0.61 +0.2
68,728 + H281DRAFT_00068 0.61 -0.1
68,893 + +0.3
68,964 + +0.3
69,218 + +0.4
69,250 + +0.7
69,251 - +0.4
69,266 + +0.4
69,489 - H281DRAFT_00069 0.19 +0.4

Or see this region's nucleotide sequence