Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00066

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00063 and H281DRAFT_00064 are separated by 135 nucleotidesH281DRAFT_00064 and H281DRAFT_00065 are separated by 24 nucleotidesH281DRAFT_00065 and H281DRAFT_00066 are separated by 77 nucleotidesH281DRAFT_00066 and H281DRAFT_00067 are separated by 426 nucleotides H281DRAFT_00063: H281DRAFT_00063 - hypothetical protein, at 65,252 to 65,557 _00063 H281DRAFT_00064: H281DRAFT_00064 - hypothetical protein, at 65,693 to 66,235 _00064 H281DRAFT_00065: H281DRAFT_00065 - hypothetical protein, at 66,260 to 66,358 _00065 H281DRAFT_00066: H281DRAFT_00066 - hypothetical protein, at 66,436 to 67,059 _00066 H281DRAFT_00067: H281DRAFT_00067 - transposase, IS4 family, at 67,486 to 68,394 _00067 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.439 kb on + strand, within H281DRAFT_00063at 65.441 kb on + strand, within H281DRAFT_00063at 65.442 kb on - strandat 65.442 kb on - strand, within H281DRAFT_00063at 65.494 kb on - strand, within H281DRAFT_00063at 65.585 kb on + strandat 65.586 kb on - strandat 65.586 kb on - strandat 65.590 kb on - strandat 65.644 kb on + strandat 65.677 kb on + strandat 65.678 kb on - strandat 65.745 kb on - strandat 65.859 kb on - strand, within H281DRAFT_00064at 65.920 kb on + strand, within H281DRAFT_00064at 65.973 kb on + strand, within H281DRAFT_00064at 65.997 kb on + strand, within H281DRAFT_00064at 66.240 kb on + strandat 66.273 kb on - strand, within H281DRAFT_00065at 66.356 kb on + strandat 66.356 kb on + strandat 66.867 kb on + strand, within H281DRAFT_00066at 66.985 kb on + strand, within H281DRAFT_00066at 67.058 kb on - strandat 67.206 kb on + strandat 67.257 kb on + strandat 67.257 kb on + strandat 67.376 kb on - strandat 67.376 kb on - strandat 67.377 kb on + strandat 67.443 kb on - strandat 67.464 kb on + strandat 67.492 kb on - strandat 67.559 kb on + strandat 67.729 kb on + strand, within H281DRAFT_00067at 67.990 kb on - strand, within H281DRAFT_00067at 68.027 kb on + strand, within H281DRAFT_00067at 68.028 kb on - strand, within H281DRAFT_00067

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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65,439 + H281DRAFT_00063 0.61 -0.5
65,441 + H281DRAFT_00063 0.62 -0.1
65,442 - +1.8
65,442 - H281DRAFT_00063 0.62 +0.2
65,494 - H281DRAFT_00063 0.79 -0.2
65,585 + +0.3
65,586 - -0.4
65,586 - -3.1
65,590 - +0.2
65,644 + +0.7
65,677 + -0.6
65,678 - +0.6
65,745 - -0.3
65,859 - H281DRAFT_00064 0.31 -1.5
65,920 + H281DRAFT_00064 0.42 +0.7
65,973 + H281DRAFT_00064 0.52 +0.1
65,997 + H281DRAFT_00064 0.56 -1.4
66,240 + -1.3
66,273 - H281DRAFT_00065 0.13 -0.3
66,356 + +0.1
66,356 + +1.5
66,867 + H281DRAFT_00066 0.69 +0.3
66,985 + H281DRAFT_00066 0.88 +0.4
67,058 - -0.2
67,206 + -0.3
67,257 + +0.8
67,257 + -0.2
67,376 - +0.4
67,376 - -0.1
67,377 + -0.3
67,443 - -0.7
67,464 + +0.4
67,492 - -0.8
67,559 + +0.3
67,729 + H281DRAFT_00067 0.27 +0.6
67,990 - H281DRAFT_00067 0.55 -1.0
68,027 + H281DRAFT_00067 0.60 +0.3
68,028 - H281DRAFT_00067 0.60 -0.4

Or see this region's nucleotide sequence