Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3492 and Dsui_3493 are separated by 278 nucleotides Dsui_3493 and Dsui_3494 are separated by 1 nucleotides Dsui_3494 and Dsui_3495 are separated by 83 nucleotides Dsui_3495 and Dsui_3496 overlap by 1 nucleotides
Dsui_3492: Dsui_3492 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,755,518 to 3,759,021
_3492
Dsui_3493: Dsui_3493 - Gram-negative bacterial tonB protein, at 3,759,300 to 3,759,743
_3493
Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674
_3494
Dsui_3495: Dsui_3495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,760,758 to 3,761,201
_3495
Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761
_3496
Position (kb)
3759
3760
3761 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3758.762 kb on + strand at 3758.802 kb on - strand at 3758.888 kb on - strand at 3758.899 kb on + strand at 3759.085 kb on - strand at 3759.097 kb on + strand at 3759.128 kb on - strand at 3759.251 kb on - strand at 3759.263 kb on + strand at 3759.271 kb on - strand at 3759.271 kb on - strand at 3759.374 kb on - strand, within Dsui_3493 at 3759.445 kb on - strand, within Dsui_3493 at 3759.547 kb on + strand, within Dsui_3493 at 3759.547 kb on - strand, within Dsui_3493 at 3759.552 kb on - strand, within Dsui_3493 at 3759.565 kb on - strand, within Dsui_3493 at 3759.634 kb on - strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493 at 3761.125 kb on - strand, within Dsui_3495 at 3761.179 kb on - strand at 3761.254 kb on + strand at 3761.327 kb on + strand at 3761.444 kb on + strand, within Dsui_3496 at 3761.462 kb on + strand at 3761.539 kb on - strand, within Dsui_3496 at 3761.539 kb on - strand, within Dsui_3496 at 3761.545 kb on - strand, within Dsui_3496 at 3761.551 kb on + strand at 3761.552 kb on + strand, within Dsui_3496
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 3,758,762 + +0.9 3,758,802 - -0.6 3,758,888 - -1.0 3,758,899 + +2.3 3,759,085 - -0.1 3,759,097 + -2.8 3,759,128 - +0.8 3,759,251 - -0.2 3,759,263 + +0.2 3,759,271 - -3.4 3,759,271 - +1.2 3,759,374 - Dsui_3493 0.17 +0.5 3,759,445 - Dsui_3493 0.33 +0.5 3,759,547 + Dsui_3493 0.56 +0.5 3,759,547 - Dsui_3493 0.56 +0.6 3,759,552 - Dsui_3493 0.57 +0.4 3,759,565 - Dsui_3493 0.60 +0.4 3,759,634 - Dsui_3493 0.75 +0.5 3,759,675 + Dsui_3493 0.84 +0.6 3,759,675 + Dsui_3493 0.84 +0.8 3,761,125 - Dsui_3495 0.83 -1.0 3,761,179 - -2.3 3,761,254 + -0.4 3,761,327 + +2.0 3,761,444 + Dsui_3496 0.43 -1.0 3,761,462 + +2.4 3,761,539 - Dsui_3496 0.60 +0.9 3,761,539 - Dsui_3496 0.60 +0.8 3,761,545 - Dsui_3496 0.61 +0.8 3,761,551 + -0.3 3,761,552 + Dsui_3496 0.63 +0.1
Or see this region's nucleotide sequence