Strain Fitness in Dechlorosoma suillum PS around Dsui_3415

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3414 and Dsui_3415 overlap by 4 nucleotidesDsui_3415 and Dsui_3416 overlap by 8 nucleotidesDsui_3416 and Dsui_3417 are separated by 56 nucleotides Dsui_3414: Dsui_3414 - FAD/FMN-dependent dehydrogenase, at 3,666,517 to 3,667,617 _3414 Dsui_3415: Dsui_3415 - FAD/FMN-dependent dehydrogenase, at 3,667,614 to 3,669,074 _3415 Dsui_3416: Dsui_3416 - transcriptional regulator, at 3,669,067 to 3,669,876 _3416 Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328 _3417 Position (kb) 3667 3668 3669 3670Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3666.652 kb on + strand, within Dsui_3414at 3666.727 kb on + strand, within Dsui_3414at 3666.755 kb on - strand, within Dsui_3414at 3666.819 kb on + strand, within Dsui_3414at 3666.856 kb on - strand, within Dsui_3414at 3666.922 kb on + strand, within Dsui_3414at 3667.048 kb on + strand, within Dsui_3414at 3667.055 kb on + strand, within Dsui_3414at 3667.055 kb on + strandat 3667.069 kb on - strand, within Dsui_3414at 3667.069 kb on - strand, within Dsui_3414at 3667.106 kb on + strandat 3667.230 kb on - strand, within Dsui_3414at 3667.237 kb on - strand, within Dsui_3414at 3667.278 kb on - strand, within Dsui_3414at 3667.378 kb on - strand, within Dsui_3414at 3667.384 kb on - strand, within Dsui_3414at 3667.419 kb on - strand, within Dsui_3414at 3667.509 kb on - strandat 3667.564 kb on + strandat 3667.582 kb on - strandat 3667.679 kb on - strandat 3667.700 kb on + strandat 3667.708 kb on - strandat 3667.752 kb on - strandat 3667.752 kb on - strandat 3667.769 kb on - strand, within Dsui_3415at 3667.820 kb on - strand, within Dsui_3415at 3667.825 kb on - strand, within Dsui_3415at 3667.829 kb on + strand, within Dsui_3415at 3667.922 kb on - strand, within Dsui_3415at 3667.934 kb on + strand, within Dsui_3415at 3667.977 kb on + strand, within Dsui_3415at 3668.007 kb on - strand, within Dsui_3415at 3668.080 kb on + strandat 3668.088 kb on - strand, within Dsui_3415at 3668.088 kb on - strand, within Dsui_3415at 3668.137 kb on + strand, within Dsui_3415at 3668.256 kb on - strand, within Dsui_3415at 3668.341 kb on - strand, within Dsui_3415at 3668.370 kb on - strand, within Dsui_3415at 3668.385 kb on - strand, within Dsui_3415at 3668.395 kb on - strand, within Dsui_3415at 3668.522 kb on + strand, within Dsui_3415at 3668.643 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.743 kb on - strand, within Dsui_3415at 3668.872 kb on - strand, within Dsui_3415at 3668.921 kb on + strand, within Dsui_3415at 3668.985 kb on - strandat 3669.073 kb on - strandat 3669.221 kb on + strand, within Dsui_3416at 3669.221 kb on + strandat 3669.431 kb on + strandat 3669.516 kb on - strand, within Dsui_3416at 3669.576 kb on + strandat 3669.673 kb on + strandat 3669.828 kb on + strandat 3669.830 kb on - strandat 3669.912 kb on - strandat 3669.960 kb on - strandat 3670.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,666,652 + Dsui_3414 0.12 -2.0
3,666,727 + Dsui_3414 0.19 -1.6
3,666,755 - Dsui_3414 0.22 -1.8
3,666,819 + Dsui_3414 0.27 -4.4
3,666,856 - Dsui_3414 0.31 -4.5
3,666,922 + Dsui_3414 0.37 -0.4
3,667,048 + Dsui_3414 0.48 -4.1
3,667,055 + Dsui_3414 0.49 -0.4
3,667,055 + -1.9
3,667,069 - Dsui_3414 0.50 +0.8
3,667,069 - Dsui_3414 0.50 -1.0
3,667,106 + +0.1
3,667,230 - Dsui_3414 0.65 -3.1
3,667,237 - Dsui_3414 0.65 +1.1
3,667,278 - Dsui_3414 0.69 -2.0
3,667,378 - Dsui_3414 0.78 -0.7
3,667,384 - Dsui_3414 0.79 -1.6
3,667,419 - Dsui_3414 0.82 -0.8
3,667,509 - -0.9
3,667,564 + +0.3
3,667,582 - -1.1
3,667,679 - -3.0
3,667,700 + -1.9
3,667,708 - -1.4
3,667,752 - +0.2
3,667,752 - -3.4
3,667,769 - Dsui_3415 0.11 -2.0
3,667,820 - Dsui_3415 0.14 -0.0
3,667,825 - Dsui_3415 0.14 +0.9
3,667,829 + Dsui_3415 0.15 -2.8
3,667,922 - Dsui_3415 0.21 -0.8
3,667,934 + Dsui_3415 0.22 -2.6
3,667,977 + Dsui_3415 0.25 -5.3
3,668,007 - Dsui_3415 0.27 -3.2
3,668,080 + -1.3
3,668,088 - Dsui_3415 0.32 -2.9
3,668,088 - Dsui_3415 0.32 -2.6
3,668,137 + Dsui_3415 0.36 -3.0
3,668,256 - Dsui_3415 0.44 -0.3
3,668,341 - Dsui_3415 0.50 +0.5
3,668,370 - Dsui_3415 0.52 -3.7
3,668,385 - Dsui_3415 0.53 -1.6
3,668,395 - Dsui_3415 0.53 -0.1
3,668,522 + Dsui_3415 0.62 -2.0
3,668,643 - Dsui_3415 0.70 -0.1
3,668,720 - Dsui_3415 0.76 +0.4
3,668,720 - Dsui_3415 0.76 +1.4
3,668,720 - Dsui_3415 0.76 +0.1
3,668,743 - Dsui_3415 0.77 -1.2
3,668,872 - Dsui_3415 0.86 -0.6
3,668,921 + Dsui_3415 0.89 -3.3
3,668,985 - -0.4
3,669,073 - -0.3
3,669,221 + Dsui_3416 0.19 -0.2
3,669,221 + -2.5
3,669,431 + -2.4
3,669,516 - Dsui_3416 0.55 +1.2
3,669,576 + -3.7
3,669,673 + -1.7
3,669,828 + -1.5
3,669,830 - +0.9
3,669,912 - -3.3
3,669,960 - -2.8
3,670,048 + -0.7

Or see this region's nucleotide sequence