Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2558 and Dsui_2559 are separated by 383 nucleotides Dsui_2559 and Dsui_2560 are separated by 98 nucleotides Dsui_2560 and Dsui_2561 overlap by 4 nucleotides
Dsui_2558: Dsui_2558 - DNA replication protein, at 2,708,937 to 2,709,671
_2558
Dsui_2559: Dsui_2559 - Protein of unknown function (DUF2523), at 2,710,055 to 2,710,408
_2559
Dsui_2560: Dsui_2560 - zonula occludens toxin, at 2,710,507 to 2,711,397
_2560
Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605
_2561
Position (kb)
2710
2711
2712 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2709.777 kb on + strand at 2709.800 kb on + strand at 2709.800 kb on + strand at 2709.941 kb on + strand at 2709.966 kb on - strand at 2710.004 kb on + strand at 2710.004 kb on + strand at 2710.124 kb on - strand, within Dsui_2559 at 2710.141 kb on + strand, within Dsui_2559 at 2710.149 kb on + strand, within Dsui_2559 at 2710.166 kb on + strand, within Dsui_2559 at 2710.191 kb on + strand, within Dsui_2559 at 2710.280 kb on - strand, within Dsui_2559 at 2710.280 kb on - strand, within Dsui_2559 at 2710.349 kb on + strand at 2710.354 kb on + strand, within Dsui_2559 at 2710.414 kb on + strand at 2710.447 kb on - strand at 2710.546 kb on - strand at 2710.596 kb on + strand at 2710.769 kb on + strand, within Dsui_2560 at 2710.896 kb on - strand at 2710.973 kb on - strand, within Dsui_2560 at 2710.983 kb on - strand, within Dsui_2560 at 2711.031 kb on - strand, within Dsui_2560 at 2711.040 kb on + strand at 2711.048 kb on - strand at 2711.131 kb on - strand at 2711.131 kb on - strand, within Dsui_2560 at 2711.214 kb on - strand, within Dsui_2560 at 2711.408 kb on + strand at 2711.427 kb on + strand at 2711.500 kb on + strand at 2711.567 kb on + strand, within Dsui_2561 at 2711.622 kb on - strand, within Dsui_2561 at 2711.680 kb on - strand, within Dsui_2561 at 2711.738 kb on + strand at 2711.819 kb on + strand, within Dsui_2561 at 2711.866 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.094 kb on + strand, within Dsui_2561 at 2712.285 kb on - strand, within Dsui_2561 at 2712.328 kb on + strand, within Dsui_2561 at 2712.336 kb on - strand, within Dsui_2561
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,709,777 + -3.3 2,709,800 + -1.1 2,709,800 + -0.3 2,709,941 + -1.6 2,709,966 - -0.8 2,710,004 + -1.3 2,710,004 + -2.1 2,710,124 - Dsui_2559 0.19 -2.5 2,710,141 + Dsui_2559 0.24 -2.5 2,710,149 + Dsui_2559 0.27 -2.7 2,710,166 + Dsui_2559 0.31 -3.8 2,710,191 + Dsui_2559 0.38 -1.7 2,710,280 - Dsui_2559 0.64 -0.6 2,710,280 - Dsui_2559 0.64 +1.3 2,710,349 + +0.3 2,710,354 + Dsui_2559 0.84 -0.8 2,710,414 + -0.7 2,710,447 - -2.5 2,710,546 - -3.1 2,710,596 + +1.3 2,710,769 + Dsui_2560 0.29 -1.3 2,710,896 - -0.7 2,710,973 - Dsui_2560 0.52 -1.7 2,710,983 - Dsui_2560 0.53 -0.3 2,711,031 - Dsui_2560 0.59 -2.8 2,711,040 + +0.3 2,711,048 - -1.3 2,711,131 - -2.5 2,711,131 - Dsui_2560 0.70 +0.0 2,711,214 - Dsui_2560 0.79 -1.3 2,711,408 + +1.8 2,711,427 + -2.6 2,711,500 + -1.8 2,711,567 + Dsui_2561 0.14 -0.8 2,711,622 - Dsui_2561 0.19 -2.3 2,711,680 - Dsui_2561 0.24 -1.3 2,711,738 + +4.1 2,711,819 + Dsui_2561 0.35 -3.6 2,711,866 + Dsui_2561 0.39 -2.8 2,712,089 + Dsui_2561 0.57 -1.0 2,712,089 + Dsui_2561 0.57 -0.4 2,712,094 + Dsui_2561 0.58 +1.2 2,712,285 - Dsui_2561 0.74 -1.9 2,712,328 + Dsui_2561 0.77 +0.2 2,712,336 - Dsui_2561 0.78 -3.2
Or see this region's nucleotide sequence