Strain Fitness in Dechlorosoma suillum PS around Dsui_2560

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2558 and Dsui_2559 are separated by 383 nucleotidesDsui_2559 and Dsui_2560 are separated by 98 nucleotidesDsui_2560 and Dsui_2561 overlap by 4 nucleotides Dsui_2558: Dsui_2558 - DNA replication protein, at 2,708,937 to 2,709,671 _2558 Dsui_2559: Dsui_2559 - Protein of unknown function (DUF2523), at 2,710,055 to 2,710,408 _2559 Dsui_2560: Dsui_2560 - zonula occludens toxin, at 2,710,507 to 2,711,397 _2560 Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605 _2561 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2709.777 kb on + strandat 2709.800 kb on + strandat 2709.800 kb on + strandat 2709.941 kb on + strandat 2709.966 kb on - strandat 2710.004 kb on + strandat 2710.004 kb on + strandat 2710.124 kb on - strand, within Dsui_2559at 2710.141 kb on + strand, within Dsui_2559at 2710.149 kb on + strand, within Dsui_2559at 2710.166 kb on + strand, within Dsui_2559at 2710.191 kb on + strand, within Dsui_2559at 2710.280 kb on - strand, within Dsui_2559at 2710.280 kb on - strand, within Dsui_2559at 2710.349 kb on + strandat 2710.354 kb on + strand, within Dsui_2559at 2710.414 kb on + strandat 2710.447 kb on - strandat 2710.546 kb on - strandat 2710.596 kb on + strandat 2710.769 kb on + strand, within Dsui_2560at 2710.896 kb on - strandat 2710.973 kb on - strand, within Dsui_2560at 2710.983 kb on - strand, within Dsui_2560at 2711.031 kb on - strand, within Dsui_2560at 2711.040 kb on + strandat 2711.048 kb on - strandat 2711.131 kb on - strandat 2711.131 kb on - strand, within Dsui_2560at 2711.214 kb on - strand, within Dsui_2560at 2711.408 kb on + strandat 2711.427 kb on + strandat 2711.500 kb on + strandat 2711.567 kb on + strand, within Dsui_2561at 2711.622 kb on - strand, within Dsui_2561at 2711.680 kb on - strand, within Dsui_2561at 2711.738 kb on + strandat 2711.819 kb on + strand, within Dsui_2561at 2711.866 kb on + strand, within Dsui_2561at 2712.089 kb on + strand, within Dsui_2561at 2712.089 kb on + strand, within Dsui_2561at 2712.094 kb on + strand, within Dsui_2561at 2712.285 kb on - strand, within Dsui_2561at 2712.328 kb on + strand, within Dsui_2561at 2712.336 kb on - strand, within Dsui_2561

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,709,777 + -3.3
2,709,800 + -1.1
2,709,800 + -0.3
2,709,941 + -1.6
2,709,966 - -0.8
2,710,004 + -1.3
2,710,004 + -2.1
2,710,124 - Dsui_2559 0.19 -2.5
2,710,141 + Dsui_2559 0.24 -2.5
2,710,149 + Dsui_2559 0.27 -2.7
2,710,166 + Dsui_2559 0.31 -3.8
2,710,191 + Dsui_2559 0.38 -1.7
2,710,280 - Dsui_2559 0.64 -0.6
2,710,280 - Dsui_2559 0.64 +1.3
2,710,349 + +0.3
2,710,354 + Dsui_2559 0.84 -0.8
2,710,414 + -0.7
2,710,447 - -2.5
2,710,546 - -3.1
2,710,596 + +1.3
2,710,769 + Dsui_2560 0.29 -1.3
2,710,896 - -0.7
2,710,973 - Dsui_2560 0.52 -1.7
2,710,983 - Dsui_2560 0.53 -0.3
2,711,031 - Dsui_2560 0.59 -2.8
2,711,040 + +0.3
2,711,048 - -1.3
2,711,131 - -2.5
2,711,131 - Dsui_2560 0.70 +0.0
2,711,214 - Dsui_2560 0.79 -1.3
2,711,408 + +1.8
2,711,427 + -2.6
2,711,500 + -1.8
2,711,567 + Dsui_2561 0.14 -0.8
2,711,622 - Dsui_2561 0.19 -2.3
2,711,680 - Dsui_2561 0.24 -1.3
2,711,738 + +4.1
2,711,819 + Dsui_2561 0.35 -3.6
2,711,866 + Dsui_2561 0.39 -2.8
2,712,089 + Dsui_2561 0.57 -1.0
2,712,089 + Dsui_2561 0.57 -0.4
2,712,094 + Dsui_2561 0.58 +1.2
2,712,285 - Dsui_2561 0.74 -1.9
2,712,328 + Dsui_2561 0.77 +0.2
2,712,336 - Dsui_2561 0.78 -3.2

Or see this region's nucleotide sequence