Strain Fitness in Dechlorosoma suillum PS around Dsui_2366

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2365 and Dsui_2366 are separated by 84 nucleotidesDsui_2366 and Dsui_2367 are separated by 101 nucleotidesDsui_2367 and Dsui_2368 are separated by 54 nucleotides Dsui_2365: Dsui_2365 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,514,708 to 2,517,632 _2365 Dsui_2366: Dsui_2366 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 2,517,717 to 2,518,520 _2366 Dsui_2367: Dsui_2367 - RNA methyltransferase, TrmH family, group 1, at 2,518,622 to 2,519,401 _2367 Dsui_2368: Dsui_2368 - serine O-acetyltransferase, at 2,519,456 to 2,520,211 _2368 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2516.833 kb on - strandat 2516.930 kb on - strandat 2516.993 kb on + strand, within Dsui_2365at 2517.276 kb on + strand, within Dsui_2365at 2517.277 kb on + strand, within Dsui_2365at 2517.304 kb on + strand, within Dsui_2365at 2517.323 kb on + strand, within Dsui_2365at 2517.350 kb on - strandat 2517.350 kb on - strandat 2517.512 kb on - strandat 2517.527 kb on + strandat 2517.535 kb on - strandat 2517.762 kb on - strandat 2517.762 kb on - strandat 2518.638 kb on + strandat 2518.648 kb on + strandat 2518.680 kb on - strandat 2518.725 kb on + strand, within Dsui_2367at 2518.730 kb on + strand, within Dsui_2367at 2518.740 kb on + strand, within Dsui_2367at 2518.839 kb on + strand, within Dsui_2367at 2518.884 kb on + strand, within Dsui_2367at 2518.968 kb on + strand, within Dsui_2367at 2518.979 kb on + strand, within Dsui_2367at 2519.005 kb on + strand, within Dsui_2367at 2519.070 kb on + strand, within Dsui_2367at 2519.103 kb on + strand, within Dsui_2367at 2519.184 kb on + strand, within Dsui_2367at 2519.306 kb on + strand, within Dsui_2367at 2519.370 kb on - strandat 2519.374 kb on + strandat 2519.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,516,833 - -2.5
2,516,930 - +1.1
2,516,993 + Dsui_2365 0.78 -0.4
2,517,276 + Dsui_2365 0.88 -2.5
2,517,277 + Dsui_2365 0.88 +3.2
2,517,304 + Dsui_2365 0.89 +0.6
2,517,323 + Dsui_2365 0.89 -1.8
2,517,350 - -1.9
2,517,350 - +0.2
2,517,512 - +0.1
2,517,527 + -2.4
2,517,535 - +1.1
2,517,762 - +1.4
2,517,762 - +0.4
2,518,638 + +0.2
2,518,648 + -0.9
2,518,680 - -1.7
2,518,725 + Dsui_2367 0.13 -0.2
2,518,730 + Dsui_2367 0.14 +0.3
2,518,740 + Dsui_2367 0.15 +0.8
2,518,839 + Dsui_2367 0.28 +0.0
2,518,884 + Dsui_2367 0.34 +0.2
2,518,968 + Dsui_2367 0.44 +0.2
2,518,979 + Dsui_2367 0.46 +0.8
2,519,005 + Dsui_2367 0.49 +1.9
2,519,070 + Dsui_2367 0.57 -4.0
2,519,103 + Dsui_2367 0.62 -0.4
2,519,184 + Dsui_2367 0.72 -0.2
2,519,306 + Dsui_2367 0.88 +0.3
2,519,370 - -1.2
2,519,374 + +0.3
2,519,450 + +0.3

Or see this region's nucleotide sequence