Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2274 and Dsui_2275 overlap by 17 nucleotides Dsui_2275 and Dsui_2276 are separated by 6 nucleotides Dsui_2276 and Dsui_2277 are separated by 210 nucleotides Dsui_2277 and Dsui_2278 overlap by 4 nucleotides
Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222
_2274
Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433
_2275
Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991
_2276
Dsui_2277: Dsui_2277 - Rhs element Vgr protein, at 2,428,202 to 2,431,027
_2277
Dsui_2278: Dsui_2278 - PGAP1-like protein, at 2,431,024 to 2,432,652
_2278
Position (kb)
2428
2429
2430
2431
2432 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2427.247 kb on - strand, within Dsui_2275 at 2427.250 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand at 2427.309 kb on + strand at 2427.309 kb on + strand, within Dsui_2275 at 2427.373 kb on + strand at 2427.446 kb on + strand at 2427.449 kb on - strand at 2427.469 kb on + strand at 2427.486 kb on - strand at 2427.793 kb on - strand, within Dsui_2276 at 2427.854 kb on + strand at 2427.878 kb on - strand, within Dsui_2276 at 2427.896 kb on - strand, within Dsui_2276 at 2427.976 kb on + strand at 2427.984 kb on - strand at 2427.997 kb on + strand at 2427.997 kb on + strand at 2428.090 kb on + strand at 2428.090 kb on + strand at 2428.106 kb on - strand at 2428.329 kb on + strand at 2428.545 kb on + strand at 2428.608 kb on - strand at 2428.806 kb on + strand at 2428.977 kb on - strand at 2428.995 kb on - strand at 2429.043 kb on + strand at 2429.080 kb on - strand at 2429.118 kb on - strand at 2429.180 kb on + strand at 2429.408 kb on - strand, within Dsui_2277 at 2429.439 kb on - strand at 2429.671 kb on + strand, within Dsui_2277 at 2429.903 kb on + strand at 2429.947 kb on + strand, within Dsui_2277 at 2429.958 kb on + strand at 2430.015 kb on - strand at 2430.021 kb on + strand, within Dsui_2277 at 2430.044 kb on + strand, within Dsui_2277 at 2430.062 kb on + strand at 2430.102 kb on - strand, within Dsui_2277 at 2430.105 kb on + strand at 2430.193 kb on + strand, within Dsui_2277 at 2430.242 kb on + strand at 2430.247 kb on + strand at 2430.255 kb on - strand, within Dsui_2277 at 2430.261 kb on - strand at 2430.291 kb on - strand at 2430.440 kb on + strand at 2430.512 kb on + strand at 2430.517 kb on + strand at 2430.565 kb on + strand at 2430.620 kb on - strand, within Dsui_2277 at 2430.823 kb on + strand at 2430.936 kb on - strand at 2430.973 kb on - strand at 2431.209 kb on + strand, within Dsui_2278 at 2431.222 kb on + strand, within Dsui_2278 at 2431.222 kb on + strand, within Dsui_2278 at 2431.227 kb on + strand, within Dsui_2278 at 2431.319 kb on + strand at 2431.322 kb on - strand, within Dsui_2278 at 2431.322 kb on - strand, within Dsui_2278 at 2431.346 kb on + strand, within Dsui_2278 at 2431.351 kb on + strand at 2431.355 kb on - strand, within Dsui_2278 at 2431.374 kb on + strand, within Dsui_2278 at 2431.461 kb on + strand at 2431.510 kb on + strand, within Dsui_2278 at 2431.538 kb on - strand, within Dsui_2278 at 2431.550 kb on - strand at 2431.556 kb on - strand, within Dsui_2278 at 2431.569 kb on - strand, within Dsui_2278 at 2431.604 kb on - strand, within Dsui_2278 at 2431.636 kb on + strand, within Dsui_2278 at 2431.673 kb on + strand, within Dsui_2278 at 2431.698 kb on + strand, within Dsui_2278 at 2431.706 kb on - strand, within Dsui_2278 at 2431.713 kb on - strand, within Dsui_2278 at 2431.730 kb on - strand, within Dsui_2278 at 2431.731 kb on - strand, within Dsui_2278 at 2431.760 kb on + strand, within Dsui_2278 at 2431.817 kb on + strand, within Dsui_2278 at 2431.908 kb on + strand, within Dsui_2278 at 2431.922 kb on - strand, within Dsui_2278 at 2431.933 kb on + strand at 2431.933 kb on + strand, within Dsui_2278 at 2431.933 kb on + strand at 2431.933 kb on + strand, within Dsui_2278 at 2431.941 kb on - strand, within Dsui_2278 at 2431.941 kb on - strand, within Dsui_2278 at 2431.949 kb on + strand, within Dsui_2278 at 2432.010 kb on + strand, within Dsui_2278 at 2432.010 kb on + strand, within Dsui_2278 at 2432.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,427,247 - Dsui_2275 0.18 +1.1 2,427,250 + Dsui_2275 0.19 -0.2 2,427,309 + Dsui_2275 0.45 -0.3 2,427,309 + Dsui_2275 0.45 -0.5 2,427,309 + -1.9 2,427,309 + -3.2 2,427,309 + Dsui_2275 0.45 -1.0 2,427,373 + -2.7 2,427,446 + -0.2 2,427,449 - +0.4 2,427,469 + +0.3 2,427,486 - +1.3 2,427,793 - Dsui_2276 0.64 +0.8 2,427,854 + -2.3 2,427,878 - Dsui_2276 0.79 +1.6 2,427,896 - Dsui_2276 0.83 +0.5 2,427,976 + -1.1 2,427,984 - +1.1 2,427,997 + -2.6 2,427,997 + -2.4 2,428,090 + -1.0 2,428,090 + +0.8 2,428,106 - -1.2 2,428,329 + -0.1 2,428,545 + -0.4 2,428,608 - -3.0 2,428,806 + -1.2 2,428,977 - +0.0 2,428,995 - -2.3 2,429,043 + -2.4 2,429,080 - -1.2 2,429,118 - +0.6 2,429,180 + -2.2 2,429,408 - Dsui_2277 0.43 -0.3 2,429,439 - -1.2 2,429,671 + Dsui_2277 0.52 -1.1 2,429,903 + -1.4 2,429,947 + Dsui_2277 0.62 -4.2 2,429,958 + -2.3 2,430,015 - -3.4 2,430,021 + Dsui_2277 0.64 -3.0 2,430,044 + Dsui_2277 0.65 +1.8 2,430,062 + +1.5 2,430,102 - Dsui_2277 0.67 -3.1 2,430,105 + -3.0 2,430,193 + Dsui_2277 0.70 -1.7 2,430,242 + -2.0 2,430,247 + -1.4 2,430,255 - Dsui_2277 0.73 -0.4 2,430,261 - -2.0 2,430,291 - +0.9 2,430,440 + -1.4 2,430,512 + -1.7 2,430,517 + -2.8 2,430,565 + +0.2 2,430,620 - Dsui_2277 0.86 -1.3 2,430,823 + -1.7 2,430,936 - -3.4 2,430,973 - -2.9 2,431,209 + Dsui_2278 0.11 -2.6 2,431,222 + Dsui_2278 0.12 +0.1 2,431,222 + Dsui_2278 0.12 -2.2 2,431,227 + Dsui_2278 0.12 -3.4 2,431,319 + -1.7 2,431,322 - Dsui_2278 0.18 +0.1 2,431,322 - Dsui_2278 0.18 -3.4 2,431,346 + Dsui_2278 0.20 -1.9 2,431,351 + -2.2 2,431,355 - Dsui_2278 0.20 -0.8 2,431,374 + Dsui_2278 0.21 +0.6 2,431,461 + -1.7 2,431,510 + Dsui_2278 0.30 -1.5 2,431,538 - Dsui_2278 0.32 -3.2 2,431,550 - -3.1 2,431,556 - Dsui_2278 0.33 +0.0 2,431,569 - Dsui_2278 0.33 -0.5 2,431,604 - Dsui_2278 0.36 -2.0 2,431,636 + Dsui_2278 0.38 -2.4 2,431,673 + Dsui_2278 0.40 +0.2 2,431,698 + Dsui_2278 0.41 +0.0 2,431,706 - Dsui_2278 0.42 -3.0 2,431,713 - Dsui_2278 0.42 -0.3 2,431,730 - Dsui_2278 0.43 +0.3 2,431,731 - Dsui_2278 0.43 -2.3 2,431,760 + Dsui_2278 0.45 +0.1 2,431,817 + Dsui_2278 0.49 +1.4 2,431,908 + Dsui_2278 0.54 -1.1 2,431,922 - Dsui_2278 0.55 -0.9 2,431,933 + -0.4 2,431,933 + Dsui_2278 0.56 -0.1 2,431,933 + -0.4 2,431,933 + Dsui_2278 0.56 +0.5 2,431,941 - Dsui_2278 0.56 -3.0 2,431,941 - Dsui_2278 0.56 -0.1 2,431,949 + Dsui_2278 0.57 -0.8 2,432,010 + Dsui_2278 0.61 -1.6 2,432,010 + Dsui_2278 0.61 +0.6 2,432,018 - -1.2
Or see this region's nucleotide sequence