Strain Fitness in Dechlorosoma suillum PS around Dsui_2277

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2274 and Dsui_2275 overlap by 17 nucleotidesDsui_2275 and Dsui_2276 are separated by 6 nucleotidesDsui_2276 and Dsui_2277 are separated by 210 nucleotidesDsui_2277 and Dsui_2278 overlap by 4 nucleotides Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222 _2274 Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433 _2275 Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991 _2276 Dsui_2277: Dsui_2277 - Rhs element Vgr protein, at 2,428,202 to 2,431,027 _2277 Dsui_2278: Dsui_2278 - PGAP1-like protein, at 2,431,024 to 2,432,652 _2278 Position (kb) 2428 2429 2430 2431 2432Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2427.247 kb on - strand, within Dsui_2275at 2427.250 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strandat 2427.309 kb on + strandat 2427.309 kb on + strand, within Dsui_2275at 2427.373 kb on + strandat 2427.446 kb on + strandat 2427.449 kb on - strandat 2427.469 kb on + strandat 2427.486 kb on - strandat 2427.793 kb on - strand, within Dsui_2276at 2427.854 kb on + strandat 2427.878 kb on - strand, within Dsui_2276at 2427.896 kb on - strand, within Dsui_2276at 2427.976 kb on + strandat 2427.984 kb on - strandat 2427.997 kb on + strandat 2427.997 kb on + strandat 2428.090 kb on + strandat 2428.090 kb on + strandat 2428.106 kb on - strandat 2428.329 kb on + strandat 2428.545 kb on + strandat 2428.608 kb on - strandat 2428.806 kb on + strandat 2428.977 kb on - strandat 2428.995 kb on - strandat 2429.043 kb on + strandat 2429.080 kb on - strandat 2429.118 kb on - strandat 2429.180 kb on + strandat 2429.408 kb on - strand, within Dsui_2277at 2429.439 kb on - strandat 2429.671 kb on + strand, within Dsui_2277at 2429.903 kb on + strandat 2429.947 kb on + strand, within Dsui_2277at 2429.958 kb on + strandat 2430.015 kb on - strandat 2430.021 kb on + strand, within Dsui_2277at 2430.044 kb on + strand, within Dsui_2277at 2430.062 kb on + strandat 2430.102 kb on - strand, within Dsui_2277at 2430.105 kb on + strandat 2430.193 kb on + strand, within Dsui_2277at 2430.242 kb on + strandat 2430.247 kb on + strandat 2430.255 kb on - strand, within Dsui_2277at 2430.261 kb on - strandat 2430.291 kb on - strandat 2430.440 kb on + strandat 2430.512 kb on + strandat 2430.517 kb on + strandat 2430.565 kb on + strandat 2430.620 kb on - strand, within Dsui_2277at 2430.823 kb on + strandat 2430.936 kb on - strandat 2430.973 kb on - strandat 2431.209 kb on + strand, within Dsui_2278at 2431.222 kb on + strand, within Dsui_2278at 2431.222 kb on + strand, within Dsui_2278at 2431.227 kb on + strand, within Dsui_2278at 2431.319 kb on + strandat 2431.322 kb on - strand, within Dsui_2278at 2431.322 kb on - strand, within Dsui_2278at 2431.346 kb on + strand, within Dsui_2278at 2431.351 kb on + strandat 2431.355 kb on - strand, within Dsui_2278at 2431.374 kb on + strand, within Dsui_2278at 2431.461 kb on + strandat 2431.510 kb on + strand, within Dsui_2278at 2431.538 kb on - strand, within Dsui_2278at 2431.550 kb on - strandat 2431.556 kb on - strand, within Dsui_2278at 2431.569 kb on - strand, within Dsui_2278at 2431.604 kb on - strand, within Dsui_2278at 2431.636 kb on + strand, within Dsui_2278at 2431.673 kb on + strand, within Dsui_2278at 2431.698 kb on + strand, within Dsui_2278at 2431.706 kb on - strand, within Dsui_2278at 2431.713 kb on - strand, within Dsui_2278at 2431.730 kb on - strand, within Dsui_2278at 2431.731 kb on - strand, within Dsui_2278at 2431.760 kb on + strand, within Dsui_2278at 2431.817 kb on + strand, within Dsui_2278at 2431.908 kb on + strand, within Dsui_2278at 2431.922 kb on - strand, within Dsui_2278at 2431.933 kb on + strandat 2431.933 kb on + strand, within Dsui_2278at 2431.933 kb on + strandat 2431.933 kb on + strand, within Dsui_2278at 2431.941 kb on - strand, within Dsui_2278at 2431.941 kb on - strand, within Dsui_2278at 2431.949 kb on + strand, within Dsui_2278at 2432.010 kb on + strand, within Dsui_2278at 2432.010 kb on + strand, within Dsui_2278at 2432.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,427,247 - Dsui_2275 0.18 +1.1
2,427,250 + Dsui_2275 0.19 -0.2
2,427,309 + Dsui_2275 0.45 -0.3
2,427,309 + Dsui_2275 0.45 -0.5
2,427,309 + -1.9
2,427,309 + -3.2
2,427,309 + Dsui_2275 0.45 -1.0
2,427,373 + -2.7
2,427,446 + -0.2
2,427,449 - +0.4
2,427,469 + +0.3
2,427,486 - +1.3
2,427,793 - Dsui_2276 0.64 +0.8
2,427,854 + -2.3
2,427,878 - Dsui_2276 0.79 +1.6
2,427,896 - Dsui_2276 0.83 +0.5
2,427,976 + -1.1
2,427,984 - +1.1
2,427,997 + -2.6
2,427,997 + -2.4
2,428,090 + -1.0
2,428,090 + +0.8
2,428,106 - -1.2
2,428,329 + -0.1
2,428,545 + -0.4
2,428,608 - -3.0
2,428,806 + -1.2
2,428,977 - +0.0
2,428,995 - -2.3
2,429,043 + -2.4
2,429,080 - -1.2
2,429,118 - +0.6
2,429,180 + -2.2
2,429,408 - Dsui_2277 0.43 -0.3
2,429,439 - -1.2
2,429,671 + Dsui_2277 0.52 -1.1
2,429,903 + -1.4
2,429,947 + Dsui_2277 0.62 -4.2
2,429,958 + -2.3
2,430,015 - -3.4
2,430,021 + Dsui_2277 0.64 -3.0
2,430,044 + Dsui_2277 0.65 +1.8
2,430,062 + +1.5
2,430,102 - Dsui_2277 0.67 -3.1
2,430,105 + -3.0
2,430,193 + Dsui_2277 0.70 -1.7
2,430,242 + -2.0
2,430,247 + -1.4
2,430,255 - Dsui_2277 0.73 -0.4
2,430,261 - -2.0
2,430,291 - +0.9
2,430,440 + -1.4
2,430,512 + -1.7
2,430,517 + -2.8
2,430,565 + +0.2
2,430,620 - Dsui_2277 0.86 -1.3
2,430,823 + -1.7
2,430,936 - -3.4
2,430,973 - -2.9
2,431,209 + Dsui_2278 0.11 -2.6
2,431,222 + Dsui_2278 0.12 +0.1
2,431,222 + Dsui_2278 0.12 -2.2
2,431,227 + Dsui_2278 0.12 -3.4
2,431,319 + -1.7
2,431,322 - Dsui_2278 0.18 +0.1
2,431,322 - Dsui_2278 0.18 -3.4
2,431,346 + Dsui_2278 0.20 -1.9
2,431,351 + -2.2
2,431,355 - Dsui_2278 0.20 -0.8
2,431,374 + Dsui_2278 0.21 +0.6
2,431,461 + -1.7
2,431,510 + Dsui_2278 0.30 -1.5
2,431,538 - Dsui_2278 0.32 -3.2
2,431,550 - -3.1
2,431,556 - Dsui_2278 0.33 +0.0
2,431,569 - Dsui_2278 0.33 -0.5
2,431,604 - Dsui_2278 0.36 -2.0
2,431,636 + Dsui_2278 0.38 -2.4
2,431,673 + Dsui_2278 0.40 +0.2
2,431,698 + Dsui_2278 0.41 +0.0
2,431,706 - Dsui_2278 0.42 -3.0
2,431,713 - Dsui_2278 0.42 -0.3
2,431,730 - Dsui_2278 0.43 +0.3
2,431,731 - Dsui_2278 0.43 -2.3
2,431,760 + Dsui_2278 0.45 +0.1
2,431,817 + Dsui_2278 0.49 +1.4
2,431,908 + Dsui_2278 0.54 -1.1
2,431,922 - Dsui_2278 0.55 -0.9
2,431,933 + -0.4
2,431,933 + Dsui_2278 0.56 -0.1
2,431,933 + -0.4
2,431,933 + Dsui_2278 0.56 +0.5
2,431,941 - Dsui_2278 0.56 -3.0
2,431,941 - Dsui_2278 0.56 -0.1
2,431,949 + Dsui_2278 0.57 -0.8
2,432,010 + Dsui_2278 0.61 -1.6
2,432,010 + Dsui_2278 0.61 +0.6
2,432,018 - -1.2

Or see this region's nucleotide sequence