Strain Fitness in Dechlorosoma suillum PS around Dsui_2165

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2164 and Dsui_2165 are separated by 264 nucleotidesDsui_2165 and Dsui_2166 overlap by 14 nucleotides Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968 _2164 Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748 _2165 Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670 _2166 Position (kb) 2301 2302Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2300.299 kb on - strand, within Dsui_2164at 2300.308 kb on + strandat 2300.316 kb on - strandat 2300.354 kb on - strandat 2300.498 kb on - strand, within Dsui_2164at 2300.679 kb on - strandat 2300.781 kb on - strandat 2300.866 kb on + strandat 2300.890 kb on - strandat 2301.188 kb on - strandat 2301.429 kb on - strandat 2301.447 kb on + strand, within Dsui_2165at 2301.502 kb on - strandat 2301.520 kb on + strand, within Dsui_2165at 2301.616 kb on + strand, within Dsui_2165at 2301.906 kb on + strand, within Dsui_2166at 2301.931 kb on + strand, within Dsui_2166at 2301.939 kb on - strandat 2301.939 kb on - strandat 2302.360 kb on + strand, within Dsui_2166at 2302.431 kb on + strandat 2302.586 kb on + strandat 2302.622 kb on - strandat 2302.648 kb on + strandat 2302.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,300,299 - Dsui_2164 0.67 +0.2
2,300,308 + -1.9
2,300,316 - -4.1
2,300,354 - +2.0
2,300,498 - Dsui_2164 0.77 -2.8
2,300,679 - -2.4
2,300,781 - +1.8
2,300,866 + -0.8
2,300,890 - -3.6
2,301,188 - -1.1
2,301,429 - -0.4
2,301,447 + Dsui_2165 0.41 +1.5
2,301,502 - -2.1
2,301,520 + Dsui_2165 0.56 +0.8
2,301,616 + Dsui_2165 0.74 +0.6
2,301,906 + Dsui_2166 0.18 +1.0
2,301,931 + Dsui_2166 0.21 -2.1
2,301,939 - -1.8
2,301,939 - -1.9
2,302,360 + Dsui_2166 0.67 -5.3
2,302,431 + +0.7
2,302,586 + -1.3
2,302,622 - -2.9
2,302,648 + +0.2
2,302,666 + +0.6

Or see this region's nucleotide sequence