Strain Fitness in Dechlorosoma suillum PS around Dsui_1757

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1756 and Dsui_1757 are separated by 137 nucleotidesDsui_1757 and Dsui_1758 are separated by 7 nucleotides Dsui_1756: Dsui_1756 - flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF, at 1,842,313 to 1,844,064 _1756 Dsui_1757: Dsui_1757 - signal transduction histidine kinase, at 1,844,202 to 1,845,407 _1757 Dsui_1758: Dsui_1758 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,845,415 to 1,846,839 _1758 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1843.300 kb on + strand, within Dsui_1756at 1843.336 kb on + strand, within Dsui_1756at 1843.373 kb on + strand, within Dsui_1756at 1843.469 kb on - strand, within Dsui_1756at 1843.472 kb on - strand, within Dsui_1756at 1843.490 kb on + strand, within Dsui_1756at 1843.494 kb on + strand, within Dsui_1756at 1843.558 kb on - strand, within Dsui_1756at 1843.588 kb on - strand, within Dsui_1756at 1843.598 kb on + strand, within Dsui_1756at 1843.631 kb on - strand, within Dsui_1756at 1843.692 kb on + strand, within Dsui_1756at 1843.802 kb on - strand, within Dsui_1756at 1843.811 kb on + strand, within Dsui_1756at 1843.811 kb on + strand, within Dsui_1756at 1843.821 kb on + strand, within Dsui_1756at 1843.829 kb on - strand, within Dsui_1756at 1843.878 kb on - strand, within Dsui_1756at 1843.913 kb on - strandat 1843.946 kb on + strandat 1843.981 kb on + strandat 1843.981 kb on + strandat 1843.981 kb on + strandat 1843.981 kb on + strandat 1843.981 kb on + strandat 1843.989 kb on - strandat 1844.043 kb on - strandat 1844.045 kb on - strandat 1844.055 kb on - strandat 1844.055 kb on - strandat 1844.074 kb on - strandat 1844.097 kb on + strandat 1844.097 kb on - strandat 1844.105 kb on - strandat 1844.112 kb on + strandat 1844.112 kb on + strandat 1844.112 kb on + strandat 1844.120 kb on - strandat 1844.120 kb on - strandat 1844.184 kb on + strandat 1844.184 kb on + strandat 1844.216 kb on + strandat 1844.216 kb on + strandat 1844.226 kb on + strandat 1844.257 kb on - strandat 1844.309 kb on + strandat 1844.408 kb on + strand, within Dsui_1757at 1844.408 kb on + strand, within Dsui_1757at 1844.429 kb on + strand, within Dsui_1757at 1844.437 kb on - strand, within Dsui_1757at 1844.457 kb on + strand, within Dsui_1757at 1844.467 kb on - strandat 1844.515 kb on + strand, within Dsui_1757at 1844.529 kb on + strand, within Dsui_1757at 1844.583 kb on + strand, within Dsui_1757at 1844.628 kb on + strand, within Dsui_1757at 1844.674 kb on + strand, within Dsui_1757at 1844.693 kb on + strand, within Dsui_1757at 1844.730 kb on + strand, within Dsui_1757at 1844.752 kb on + strand, within Dsui_1757at 1844.784 kb on + strand, within Dsui_1757at 1844.799 kb on + strand, within Dsui_1757at 1844.913 kb on + strand, within Dsui_1757at 1844.974 kb on + strand, within Dsui_1757at 1844.982 kb on + strand, within Dsui_1757at 1845.020 kb on + strand, within Dsui_1757at 1845.054 kb on + strand, within Dsui_1757at 1845.059 kb on + strand, within Dsui_1757at 1845.061 kb on - strandat 1845.108 kb on + strand, within Dsui_1757at 1845.108 kb on + strand, within Dsui_1757at 1845.116 kb on - strand, within Dsui_1757at 1845.119 kb on - strand, within Dsui_1757at 1845.159 kb on + strand, within Dsui_1757at 1845.438 kb on + strandat 1845.490 kb on - strandat 1845.563 kb on - strand, within Dsui_1758at 1845.599 kb on - strand, within Dsui_1758at 1845.602 kb on + strand, within Dsui_1758at 1845.620 kb on - strand, within Dsui_1758at 1845.673 kb on + strand, within Dsui_1758at 1845.696 kb on - strandat 1845.746 kb on - strandat 1845.750 kb on + strand, within Dsui_1758at 1845.869 kb on + strand, within Dsui_1758at 1845.879 kb on + strand, within Dsui_1758at 1845.899 kb on - strandat 1845.908 kb on - strand, within Dsui_1758at 1845.969 kb on + strand, within Dsui_1758at 1845.984 kb on + strand, within Dsui_1758at 1846.050 kb on + strand, within Dsui_1758at 1846.085 kb on - strand, within Dsui_1758at 1846.256 kb on - strand, within Dsui_1758at 1846.319 kb on + strand, within Dsui_1758at 1846.327 kb on - strand, within Dsui_1758

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
1,843,300 + Dsui_1756 0.56 +0.5
1,843,336 + Dsui_1756 0.58 +0.3
1,843,373 + Dsui_1756 0.61 +0.2
1,843,469 - Dsui_1756 0.66 -0.4
1,843,472 - Dsui_1756 0.66 +0.8
1,843,490 + Dsui_1756 0.67 +0.3
1,843,494 + Dsui_1756 0.67 -0.2
1,843,558 - Dsui_1756 0.71 +0.7
1,843,588 - Dsui_1756 0.73 -0.4
1,843,598 + Dsui_1756 0.73 -0.8
1,843,631 - Dsui_1756 0.75 +0.9
1,843,692 + Dsui_1756 0.79 +0.2
1,843,802 - Dsui_1756 0.85 +1.1
1,843,811 + Dsui_1756 0.86 -0.1
1,843,811 + Dsui_1756 0.86 -0.6
1,843,821 + Dsui_1756 0.86 +0.2
1,843,829 - Dsui_1756 0.87 +0.7
1,843,878 - Dsui_1756 0.89 +0.8
1,843,913 - +0.3
1,843,946 + -0.6
1,843,981 + +0.6
1,843,981 + +0.4
1,843,981 + -0.2
1,843,981 + +0.7
1,843,981 + -0.1
1,843,989 - -1.7
1,844,043 - -3.3
1,844,045 - +1.7
1,844,055 - +0.8
1,844,055 - +1.4
1,844,074 - -0.2
1,844,097 + -3.8
1,844,097 - +1.0
1,844,105 - +0.8
1,844,112 + -1.3
1,844,112 + +0.2
1,844,112 + +0.1
1,844,120 - +0.8
1,844,120 - +1.1
1,844,184 + -0.6
1,844,184 + +0.4
1,844,216 + +0.9
1,844,216 + +0.8
1,844,226 + -2.8
1,844,257 - +1.0
1,844,309 + -5.3
1,844,408 + Dsui_1757 0.17 +0.3
1,844,408 + Dsui_1757 0.17 +0.2
1,844,429 + Dsui_1757 0.19 +0.3
1,844,437 - Dsui_1757 0.19 -5.3
1,844,457 + Dsui_1757 0.21 -0.9
1,844,467 - -3.1
1,844,515 + Dsui_1757 0.26 -0.5
1,844,529 + Dsui_1757 0.27 -2.3
1,844,583 + Dsui_1757 0.32 -1.2
1,844,628 + Dsui_1757 0.35 -1.6
1,844,674 + Dsui_1757 0.39 -1.3
1,844,693 + Dsui_1757 0.41 -4.0
1,844,730 + Dsui_1757 0.44 -1.2
1,844,752 + Dsui_1757 0.46 -2.6
1,844,784 + Dsui_1757 0.48 -1.7
1,844,799 + Dsui_1757 0.50 -0.3
1,844,913 + Dsui_1757 0.59 +1.3
1,844,974 + Dsui_1757 0.64 -0.4
1,844,982 + Dsui_1757 0.65 -0.4
1,845,020 + Dsui_1757 0.68 -1.8
1,845,054 + Dsui_1757 0.71 +0.4
1,845,059 + Dsui_1757 0.71 +0.5
1,845,061 - -2.1
1,845,108 + Dsui_1757 0.75 -0.3
1,845,108 + Dsui_1757 0.75 +1.2
1,845,116 - Dsui_1757 0.76 -2.9
1,845,119 - Dsui_1757 0.76 -3.3
1,845,159 + Dsui_1757 0.79 +1.0
1,845,438 + -0.6
1,845,490 - -3.4
1,845,563 - Dsui_1758 0.10 -0.4
1,845,599 - Dsui_1758 0.13 -4.2
1,845,602 + Dsui_1758 0.13 +0.4
1,845,620 - Dsui_1758 0.14 -3.7
1,845,673 + Dsui_1758 0.18 +0.6
1,845,696 - +1.0
1,845,746 - +1.2
1,845,750 + Dsui_1758 0.24 +1.6
1,845,869 + Dsui_1758 0.32 +0.9
1,845,879 + Dsui_1758 0.33 +1.2
1,845,899 - -2.4
1,845,908 - Dsui_1758 0.35 -0.0
1,845,969 + Dsui_1758 0.39 +4.8
1,845,984 + Dsui_1758 0.40 +1.1
1,846,050 + Dsui_1758 0.45 +1.6
1,846,085 - Dsui_1758 0.47 -0.8
1,846,256 - Dsui_1758 0.59 -2.8
1,846,319 + Dsui_1758 0.63 +1.0
1,846,327 - Dsui_1758 0.64 -1.1

Or see this region's nucleotide sequence