Strain Fitness in Dechlorosoma suillum PS around Dsui_1464

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1463 and Dsui_1464 are separated by 300 nucleotidesDsui_1464 and Dsui_1465 are separated by 102 nucleotides Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446 _1463 Dsui_1464: Dsui_1464 - NAD-dependent aldehyde dehydrogenase, at 1,524,747 to 1,526,267 _1464 Dsui_1465: Dsui_1465 - hypothetical protein, at 1,526,370 to 1,527,881 _1465 Position (kb) 1524 1525 1526 1527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1523.832 kb on + strandat 1523.863 kb on - strandat 1523.863 kb on - strandat 1523.939 kb on + strand, within Dsui_1463at 1524.023 kb on - strand, within Dsui_1463at 1524.025 kb on + strand, within Dsui_1463at 1524.083 kb on - strandat 1524.175 kb on + strand, within Dsui_1463at 1524.183 kb on - strandat 1524.195 kb on - strand, within Dsui_1463at 1524.216 kb on - strand, within Dsui_1463at 1524.302 kb on + strandat 1524.520 kb on + strandat 1524.540 kb on - strandat 1524.540 kb on - strandat 1524.715 kb on + strandat 1524.718 kb on - strandat 1524.783 kb on + strandat 1524.867 kb on + strandat 1524.883 kb on + strandat 1524.889 kb on - strandat 1524.890 kb on - strandat 1525.061 kb on - strand, within Dsui_1464at 1525.206 kb on + strand, within Dsui_1464at 1525.243 kb on + strand, within Dsui_1464at 1525.380 kb on - strandat 1525.391 kb on + strand, within Dsui_1464at 1525.500 kb on + strand, within Dsui_1464at 1525.525 kb on + strandat 1525.533 kb on - strandat 1525.533 kb on - strand, within Dsui_1464at 1525.533 kb on - strand, within Dsui_1464at 1525.533 kb on - strandat 1525.612 kb on + strand, within Dsui_1464at 1525.627 kb on + strand, within Dsui_1464at 1525.627 kb on + strand, within Dsui_1464at 1525.652 kb on - strand, within Dsui_1464at 1525.718 kb on + strandat 1525.718 kb on + strand, within Dsui_1464at 1525.726 kb on - strand, within Dsui_1464at 1525.744 kb on - strand, within Dsui_1464at 1525.830 kb on - strandat 1525.844 kb on + strand, within Dsui_1464at 1525.892 kb on - strand, within Dsui_1464at 1525.913 kb on + strand, within Dsui_1464at 1525.928 kb on - strand, within Dsui_1464at 1526.033 kb on - strand, within Dsui_1464at 1526.113 kb on - strand, within Dsui_1464at 1526.113 kb on - strand, within Dsui_1464at 1526.217 kb on + strandat 1526.242 kb on + strandat 1526.517 kb on + strandat 1526.564 kb on - strand, within Dsui_1465at 1526.606 kb on + strandat 1526.606 kb on + strand, within Dsui_1465at 1526.614 kb on - strand, within Dsui_1465at 1526.697 kb on - strand, within Dsui_1465at 1526.898 kb on + strand, within Dsui_1465at 1527.013 kb on + strandat 1527.014 kb on + strand, within Dsui_1465at 1527.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,523,832 + -1.9
1,523,863 - -1.5
1,523,863 - -0.0
1,523,939 + Dsui_1463 0.74 +0.8
1,524,023 - Dsui_1463 0.78 +0.2
1,524,025 + Dsui_1463 0.78 -1.0
1,524,083 - -0.7
1,524,175 + Dsui_1463 0.86 -0.7
1,524,183 - +1.0
1,524,195 - Dsui_1463 0.87 +0.9
1,524,216 - Dsui_1463 0.88 -1.2
1,524,302 + +0.2
1,524,520 + -4.5
1,524,540 - -0.3
1,524,540 - +0.5
1,524,715 + +1.2
1,524,718 - -3.3
1,524,783 + -1.9
1,524,867 + +1.2
1,524,883 + +0.5
1,524,889 - +0.4
1,524,890 - +0.2
1,525,061 - Dsui_1464 0.21 +0.7
1,525,206 + Dsui_1464 0.30 +2.1
1,525,243 + Dsui_1464 0.33 -0.9
1,525,380 - +1.4
1,525,391 + Dsui_1464 0.42 -2.7
1,525,500 + Dsui_1464 0.50 +0.0
1,525,525 + -0.6
1,525,533 - -2.4
1,525,533 - Dsui_1464 0.52 -2.4
1,525,533 - Dsui_1464 0.52 +0.2
1,525,533 - -1.9
1,525,612 + Dsui_1464 0.57 -0.2
1,525,627 + Dsui_1464 0.58 +2.8
1,525,627 + Dsui_1464 0.58 +1.3
1,525,652 - Dsui_1464 0.60 -0.6
1,525,718 + +0.2
1,525,718 + Dsui_1464 0.64 +0.1
1,525,726 - Dsui_1464 0.64 -0.4
1,525,744 - Dsui_1464 0.66 -1.5
1,525,830 - +0.1
1,525,844 + Dsui_1464 0.72 +0.3
1,525,892 - Dsui_1464 0.75 -1.5
1,525,913 + Dsui_1464 0.77 +1.1
1,525,928 - Dsui_1464 0.78 +1.0
1,526,033 - Dsui_1464 0.85 -0.3
1,526,113 - Dsui_1464 0.90 -1.3
1,526,113 - Dsui_1464 0.90 +0.4
1,526,217 + +0.5
1,526,242 + +0.4
1,526,517 + +0.3
1,526,564 - Dsui_1465 0.13 +0.8
1,526,606 + +0.0
1,526,606 + Dsui_1465 0.16 +0.5
1,526,614 - Dsui_1465 0.16 -1.3
1,526,697 - Dsui_1465 0.22 -1.2
1,526,898 + Dsui_1465 0.35 +0.4
1,527,013 + +0.1
1,527,014 + Dsui_1465 0.43 +0.1
1,527,147 - +0.7

Or see this region's nucleotide sequence