Strain Fitness in Dechlorosoma suillum PS around Dsui_1395

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1394 and Dsui_1395 are separated by 279 nucleotidesDsui_1395 and Dsui_1396 are separated by 154 nucleotides Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534 _1394 Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718 _1395 Dsui_1396: Dsui_1396 - type II secretory pathway, component ExeA (predicted ATPase), at 1,455,873 to 1,457,318 _1396 Position (kb) 1453 1454 1455 1456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1452.830 kb on - strand, within Dsui_1394at 1452.892 kb on - strand, within Dsui_1394at 1453.053 kb on - strandat 1453.103 kb on - strand, within Dsui_1394at 1453.431 kb on - strand, within Dsui_1394at 1453.468 kb on - strandat 1453.789 kb on - strandat 1453.791 kb on + strandat 1454.147 kb on + strand, within Dsui_1395at 1454.148 kb on + strand, within Dsui_1395at 1454.205 kb on + strandat 1454.206 kb on + strandat 1454.253 kb on + strand, within Dsui_1395at 1454.282 kb on + strandat 1454.352 kb on + strandat 1454.402 kb on + strand, within Dsui_1395at 1454.456 kb on - strand, within Dsui_1395at 1454.467 kb on + strandat 1454.467 kb on - strand, within Dsui_1395at 1454.720 kb on + strand, within Dsui_1395at 1455.003 kb on + strand, within Dsui_1395at 1455.255 kb on - strand, within Dsui_1395at 1455.255 kb on - strand, within Dsui_1395at 1455.292 kb on - strand, within Dsui_1395at 1455.297 kb on - strand, within Dsui_1395at 1455.354 kb on + strand, within Dsui_1395at 1455.460 kb on - strand, within Dsui_1395at 1455.503 kb on - strand, within Dsui_1395at 1455.622 kb on + strandat 1455.622 kb on + strandat 1455.630 kb on - strandat 1455.630 kb on - strandat 1455.701 kb on + strandat 1455.706 kb on + strandat 1455.727 kb on + strandat 1455.733 kb on - strandat 1455.772 kb on + strandat 1455.898 kb on + strandat 1455.898 kb on + strandat 1456.079 kb on - strand, within Dsui_1396at 1456.160 kb on - strand, within Dsui_1396at 1456.261 kb on - strand, within Dsui_1396at 1456.670 kb on + strand, within Dsui_1396

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,452,830 - Dsui_1394 0.28 -1.1
1,452,892 - Dsui_1394 0.34 +1.0
1,453,053 - -2.5
1,453,103 - Dsui_1394 0.56 +1.8
1,453,431 - Dsui_1394 0.89 +0.4
1,453,468 - +0.8
1,453,789 - +0.6
1,453,791 + -0.9
1,454,147 + Dsui_1395 0.17 +1.7
1,454,148 + Dsui_1395 0.18 +1.4
1,454,205 + -0.0
1,454,206 + -1.0
1,454,253 + Dsui_1395 0.23 -0.3
1,454,282 + -1.4
1,454,352 + -0.7
1,454,402 + Dsui_1395 0.31 -2.1
1,454,456 - Dsui_1395 0.34 -2.0
1,454,467 + -2.0
1,454,467 - Dsui_1395 0.34 +0.0
1,454,720 + Dsui_1395 0.48 +0.7
1,455,003 + Dsui_1395 0.62 -2.3
1,455,255 - Dsui_1395 0.76 +0.1
1,455,255 - Dsui_1395 0.76 +1.1
1,455,292 - Dsui_1395 0.78 +1.1
1,455,297 - Dsui_1395 0.78 +1.8
1,455,354 + Dsui_1395 0.81 +0.6
1,455,460 - Dsui_1395 0.86 +0.1
1,455,503 - Dsui_1395 0.89 -0.8
1,455,622 + -2.0
1,455,622 + +1.2
1,455,630 - +1.1
1,455,630 - +0.5
1,455,701 + +0.2
1,455,706 + -1.7
1,455,727 + -0.1
1,455,733 - +0.4
1,455,772 + -1.0
1,455,898 + -3.6
1,455,898 + -3.4
1,456,079 - Dsui_1396 0.14 +0.4
1,456,160 - Dsui_1396 0.20 +0.9
1,456,261 - Dsui_1396 0.27 +0.5
1,456,670 + Dsui_1396 0.55 -2.3

Or see this region's nucleotide sequence