Strain Fitness in Dechlorosoma suillum PS around Dsui_1321

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1320 and Dsui_1321 are separated by 275 nucleotidesDsui_1321 and Dsui_1322 are separated by 45 nucleotides Dsui_1320: Dsui_1320 - type IV-A pilus assembly ATPase PilB, at 1,378,521 to 1,380,239 _1320 Dsui_1321: Dsui_1321 - ABC-type uncharacterized transport system, permease component, at 1,380,515 to 1,381,354 _1321 Dsui_1322: Dsui_1322 - signal recognition particle protein, at 1,381,400 to 1,382,755 _1322 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1379.681 kb on - strand, within Dsui_1320at 1379.688 kb on - strand, within Dsui_1320at 1379.704 kb on - strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.732 kb on - strand, within Dsui_1320at 1379.762 kb on - strand, within Dsui_1320at 1379.762 kb on - strand, within Dsui_1320at 1379.853 kb on + strand, within Dsui_1320at 1379.866 kb on - strand, within Dsui_1320at 1379.978 kb on + strand, within Dsui_1320at 1380.087 kb on + strandat 1380.146 kb on - strandat 1380.160 kb on + strandat 1380.161 kb on - strandat 1380.167 kb on - strandat 1380.178 kb on + strandat 1380.178 kb on - strandat 1380.184 kb on + strandat 1380.184 kb on + strandat 1380.186 kb on - strandat 1380.192 kb on - strandat 1380.210 kb on + strandat 1380.218 kb on - strandat 1380.250 kb on - strandat 1380.257 kb on + strandat 1380.372 kb on - strandat 1380.381 kb on + strandat 1380.389 kb on - strandat 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.599 kb on + strand, within Dsui_1321at 1380.599 kb on + strand, within Dsui_1321at 1380.774 kb on - strand, within Dsui_1321at 1380.990 kb on - strand, within Dsui_1321at 1381.038 kb on + strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.128 kb on - strand, within Dsui_1321

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,379,681 - Dsui_1320 0.67 +0.4
1,379,688 - Dsui_1320 0.68 -1.2
1,379,704 - Dsui_1320 0.69 +0.5
1,379,719 + Dsui_1320 0.70 +0.5
1,379,719 + Dsui_1320 0.70 +4.0
1,379,719 + Dsui_1320 0.70 -0.2
1,379,719 + Dsui_1320 0.70 -0.2
1,379,732 - Dsui_1320 0.70 -0.5
1,379,762 - Dsui_1320 0.72 +1.4
1,379,762 - Dsui_1320 0.72 +0.5
1,379,853 + Dsui_1320 0.77 -1.8
1,379,866 - Dsui_1320 0.78 +0.3
1,379,978 + Dsui_1320 0.85 -3.3
1,380,087 + +0.8
1,380,146 - +0.1
1,380,160 + -0.9
1,380,161 - +0.3
1,380,167 - +0.9
1,380,178 + -1.5
1,380,178 - +1.1
1,380,184 + -1.5
1,380,184 + -1.3
1,380,186 - +1.0
1,380,192 - +1.2
1,380,210 + +1.2
1,380,218 - +0.7
1,380,250 - +0.8
1,380,257 + +0.2
1,380,372 - +0.4
1,380,381 + -0.6
1,380,389 - +0.5
1,380,466 - +0.8
1,380,466 - -2.1
1,380,466 - +1.0
1,380,599 + Dsui_1321 0.10 -0.3
1,380,599 + Dsui_1321 0.10 -2.7
1,380,774 - Dsui_1321 0.31 -4.5
1,380,990 - Dsui_1321 0.57 -5.5
1,381,038 + Dsui_1321 0.62 -2.2
1,381,116 - Dsui_1321 0.72 -1.4
1,381,116 - Dsui_1321 0.72 -2.6
1,381,128 - Dsui_1321 0.73 -5.3

Or see this region's nucleotide sequence