Strain Fitness in Dechlorosoma suillum PS around Dsui_1199

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1198 and Dsui_1199 are separated by 51 nucleotidesDsui_1199 and Dsui_1200 are separated by 2 nucleotides Dsui_1198: Dsui_1198 - apolipoprotein N-acyltransferase, at 1,249,877 to 1,251,394 _1198 Dsui_1199: Dsui_1199 - glycyl-tRNA synthetase, tetrameric type, alpha subunit, at 1,251,446 to 1,252,375 _1199 Dsui_1200: Dsui_1200 - glycyl-tRNA synthetase, tetrameric type, beta subunit, at 1,252,378 to 1,254,621 _1200 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -3 -2 -1 0 1at 1250.559 kb on + strand, within Dsui_1198at 1250.559 kb on + strand, within Dsui_1198at 1250.645 kb on - strandat 1250.650 kb on - strandat 1250.656 kb on - strandat 1250.850 kb on + strand, within Dsui_1198at 1250.868 kb on - strandat 1250.936 kb on - strandat 1250.954 kb on - strandat 1251.079 kb on + strand, within Dsui_1198at 1251.088 kb on + strand, within Dsui_1198at 1251.179 kb on - strandat 1251.229 kb on + strand, within Dsui_1198at 1251.229 kb on + strand, within Dsui_1198at 1251.237 kb on - strand, within Dsui_1198at 1251.277 kb on + strandat 1251.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,250,559 + Dsui_1198 0.45 -1.7
1,250,559 + Dsui_1198 0.45 -0.5
1,250,645 - -2.6
1,250,650 - -2.6
1,250,656 - -2.8
1,250,850 + Dsui_1198 0.64 -0.8
1,250,868 - -2.5
1,250,936 - -2.8
1,250,954 - -2.5
1,251,079 + Dsui_1198 0.79 -2.4
1,251,088 + Dsui_1198 0.80 -1.6
1,251,179 - -1.7
1,251,229 + Dsui_1198 0.89 -0.5
1,251,229 + Dsui_1198 0.89 -0.6
1,251,237 - Dsui_1198 0.90 -0.7
1,251,277 + -1.7
1,251,345 + -1.1

Or see this region's nucleotide sequence