Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1182 and Dsui_1183 overlap by 4 nucleotides Dsui_1183 and Dsui_1184 are separated by 120 nucleotides Dsui_1184 and Dsui_1185 are separated by 39 nucleotides Dsui_1185 and Dsui_1186 are separated by 12 nucleotides
Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862
_1182
Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032
_1183
Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470
_1184
Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866
_1185
Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194
_1186
Position (kb)
1237
1238 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1237.078 kb on - strand at 1237.104 kb on + strand at 1237.112 kb on - strand at 1237.116 kb on + strand at 1237.123 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.462 kb on - strand at 1237.493 kb on - strand at 1237.517 kb on + strand at 1237.525 kb on - strand at 1237.541 kb on - strand at 1237.552 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.852 kb on + strand at 1237.962 kb on - strand at 1237.970 kb on + strand at 1237.970 kb on + strand at 1237.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 1,237,078 - -0.2 1,237,104 + +1.1 1,237,112 - +0.3 1,237,116 + +0.8 1,237,123 - +0.0 1,237,124 - +0.8 1,237,124 - +1.7 1,237,124 - +0.1 1,237,462 - -4.7 1,237,493 - +1.2 1,237,517 + -2.0 1,237,525 - -2.0 1,237,541 - +1.2 1,237,552 - Dsui_1185 0.12 +1.2 1,237,615 - Dsui_1185 0.29 +1.5 1,237,615 - Dsui_1185 0.29 +0.2 1,237,615 - Dsui_1185 0.29 +0.2 1,237,852 + +1.3 1,237,962 - -0.2 1,237,970 + -0.4 1,237,970 + -1.9 1,237,992 + -0.9
Or see this region's nucleotide sequence