Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0877 and Dsui_0878 are separated by 322 nucleotides Dsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0879 and Dsui_0880 are separated by 157 nucleotides Dsui_0880 and Dsui_0881 are separated by 21 nucleotides
Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863
_0877
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Position (kb) 891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 890.858 kb on + strand at 890.858 kb on - strand at 890.903 kb on - strand at 890.954 kb on - strand at 890.985 kb on + strand at 891.001 kb on + strand at 891.002 kb on + strand at 891.008 kb on + strand at 891.008 kb on - strand at 891.009 kb on - strand at 891.054 kb on - strand at 891.067 kb on + strand at 891.099 kb on - strand at 891.119 kb on + strand at 891.144 kb on + strand at 891.144 kb on + strand at 891.162 kb on - strand at 891.184 kb on + strand at 891.223 kb on + strand at 891.223 kb on + strand at 891.228 kb on + strand at 891.233 kb on + strand at 891.233 kb on + strand at 891.241 kb on - strand at 891.244 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.255 kb on + strand, within Dsui_0878 at 891.322 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.340 kb on - strand, within Dsui_0878 at 891.377 kb on - strand at 891.388 kb on + strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.574 kb on + strand, within Dsui_0878 at 891.582 kb on - strand at 891.588 kb on - strand, within Dsui_0878 at 891.593 kb on - strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.632 kb on - strand, within Dsui_0878 at 891.632 kb on - strand at 891.632 kb on - strand, within Dsui_0878 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand at 891.905 kb on + strand, within Dsui_0879 at 891.913 kb on - strand at 891.923 kb on - strand at 891.988 kb on + strand, within Dsui_0879 at 892.073 kb on + strand, within Dsui_0879 at 892.145 kb on - strand at 892.260 kb on + strand at 892.265 kb on + strand at 892.273 kb on - strand at 892.278 kb on + strand at 892.278 kb on + strand at 892.328 kb on + strand at 892.330 kb on - strand at 892.336 kb on - strand at 892.341 kb on - strand, within Dsui_0880 at 892.403 kb on - strand, within Dsui_0880 at 892.467 kb on + strand, within Dsui_0880 at 892.481 kb on + strand, within Dsui_0880 at 892.497 kb on + strand, within Dsui_0880 at 892.497 kb on - strand, within Dsui_0880 at 892.523 kb on + strand at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881 at 892.876 kb on - strand, within Dsui_0881 at 892.900 kb on - strand, within Dsui_0881 at 892.921 kb on + strand, within Dsui_0881 at 892.929 kb on + strand, within Dsui_0881 at 893.065 kb on - strand, within Dsui_0881
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 890,858 + +0.2 890,858 - -1.8 890,903 - -1.3 890,954 - +0.3 890,985 + +2.3 891,001 + -1.1 891,002 + +0.3 891,008 + +0.4 891,008 - -2.0 891,009 - -0.3 891,054 - -3.0 891,067 + -0.3 891,099 - -2.7 891,119 + -2.8 891,144 + +0.5 891,144 + -1.9 891,162 - -1.1 891,184 + +0.3 891,223 + +0.3 891,223 + +0.3 891,228 + +1.7 891,233 + -0.5 891,233 + +1.0 891,241 - +0.5 891,244 + +1.5 891,250 + Dsui_0878 0.10 +0.6 891,250 + Dsui_0878 0.10 +1.0 891,250 + +0.8 891,250 + Dsui_0878 0.10 +0.8 891,255 + Dsui_0878 0.11 +0.1 891,322 + Dsui_0878 0.21 -1.5 891,332 + Dsui_0878 0.23 +1.0 891,332 + Dsui_0878 0.23 +1.8 891,340 - Dsui_0878 0.24 -0.5 891,377 - -1.6 891,388 + Dsui_0878 0.32 -4.5 891,396 - Dsui_0878 0.33 +0.9 891,396 - Dsui_0878 0.33 -0.3 891,574 + Dsui_0878 0.61 +0.7 891,582 - -1.6 891,588 - Dsui_0878 0.63 +0.3 891,593 - Dsui_0878 0.64 +0.6 891,624 + Dsui_0878 0.69 +0.2 891,624 + Dsui_0878 0.69 -0.4 891,624 + Dsui_0878 0.69 +0.1 891,624 + Dsui_0878 0.69 +0.2 891,628 + Dsui_0878 0.69 +0.4 891,628 + Dsui_0878 0.69 -0.6 891,632 - Dsui_0878 0.70 -1.2 891,632 - -1.9 891,632 - Dsui_0878 0.70 +0.1 891,653 + Dsui_0878 0.73 -1.1 891,661 + Dsui_0878 0.75 +0.1 891,662 - Dsui_0878 0.75 -1.0 891,769 + +0.2 891,787 - -3.7 891,803 + -0.1 891,806 - +1.2 891,815 + -0.4 891,816 + -0.3 891,818 - +0.2 891,847 + -0.8 891,905 + Dsui_0879 0.22 -2.0 891,913 - -0.8 891,923 - -2.9 891,988 + Dsui_0879 0.49 -0.1 892,073 + Dsui_0879 0.77 +0.1 892,145 - -0.2 892,260 + +0.3 892,265 + -0.5 892,273 - -0.4 892,278 + -0.5 892,278 + -0.1 892,328 + +1.2 892,330 - -0.5 892,336 - +1.4 892,341 - Dsui_0880 0.12 +0.5 892,403 - Dsui_0880 0.32 +0.6 892,467 + Dsui_0880 0.52 -1.2 892,481 + Dsui_0880 0.56 -0.2 892,497 + Dsui_0880 0.61 -0.2 892,497 - Dsui_0880 0.61 -2.0 892,523 + -1.7 892,575 - Dsui_0880 0.86 -0.4 892,590 + -2.2 892,686 - +0.5 892,693 + -0.3 892,719 + Dsui_0881 0.11 -0.5 892,743 + Dsui_0881 0.14 +0.2 892,751 - Dsui_0881 0.16 -0.2 892,758 + Dsui_0881 0.17 -0.0 892,771 - -1.9 892,787 - Dsui_0881 0.21 -0.2 892,821 - Dsui_0881 0.25 +0.8 892,876 - Dsui_0881 0.33 -1.0 892,900 - Dsui_0881 0.37 -0.2 892,921 + Dsui_0881 0.40 -4.2 892,929 + Dsui_0881 0.41 +0.3 893,065 - Dsui_0881 0.60 -0.1
Or see this region's nucleotide sequence