Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19205 and CSW01_19210 are separated by 126 nucleotides CSW01_19210 and CSW01_19215 are separated by 364 nucleotides CSW01_19215 and CSW01_19220 are separated by 130 nucleotides
CSW01_19205: CSW01_19205 - flavohemoglobin expression-modulating QEGLA motif protein, at 968,012 to 969,872
_19205
CSW01_19210: CSW01_19210 - DUF3081 domain-containing protein, at 969,999 to 970,250
_19210
CSW01_19215: CSW01_19215 - glucosamine-6-phosphate deaminase, at 970,615 to 971,415
_19215
CSW01_19220: CSW01_19220 - sel1 repeat family protein, at 971,546 to 972,703
_19220
Position (kb) 970
971
972 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 969.634 kb on - strand, within CSW01_19205 at 969.783 kb on - strand at 969.813 kb on + strand at 969.865 kb on + strand at 969.913 kb on - strand at 969.923 kb on + strand at 969.931 kb on - strand at 969.933 kb on + strand at 970.080 kb on - strand, within CSW01_19210 at 970.155 kb on - strand, within CSW01_19210 at 970.399 kb on + strand at 970.406 kb on + strand at 970.622 kb on - strand at 970.663 kb on + strand at 970.663 kb on + strand at 970.779 kb on + strand, within CSW01_19215 at 970.799 kb on + strand, within CSW01_19215 at 970.821 kb on - strand, within CSW01_19215 at 970.855 kb on - strand, within CSW01_19215 at 970.857 kb on + strand, within CSW01_19215 at 970.859 kb on - strand, within CSW01_19215 at 970.938 kb on - strand, within CSW01_19215 at 970.946 kb on - strand, within CSW01_19215 at 971.013 kb on + strand, within CSW01_19215 at 971.013 kb on + strand, within CSW01_19215 at 971.036 kb on - strand, within CSW01_19215 at 971.155 kb on + strand, within CSW01_19215 at 971.170 kb on - strand, within CSW01_19215 at 971.180 kb on - strand, within CSW01_19215 at 971.199 kb on - strand, within CSW01_19215 at 971.227 kb on + strand, within CSW01_19215 at 971.232 kb on + strand, within CSW01_19215 at 971.247 kb on + strand, within CSW01_19215 at 971.260 kb on + strand, within CSW01_19215 at 971.270 kb on + strand, within CSW01_19215 at 971.288 kb on - strand, within CSW01_19215 at 971.288 kb on - strand, within CSW01_19215 at 971.290 kb on + strand, within CSW01_19215 at 971.304 kb on + strand, within CSW01_19215 at 971.318 kb on - strand, within CSW01_19215 at 971.330 kb on - strand, within CSW01_19215 at 971.527 kb on + strand at 971.528 kb on + strand at 971.567 kb on - strand at 971.629 kb on - strand at 971.727 kb on + strand, within CSW01_19220 at 971.879 kb on - strand, within CSW01_19220 at 971.924 kb on + strand, within CSW01_19220 at 971.963 kb on + strand, within CSW01_19220 at 971.970 kb on + strand, within CSW01_19220 at 971.971 kb on - strand, within CSW01_19220 at 971.978 kb on - strand, within CSW01_19220 at 972.045 kb on - strand, within CSW01_19220 at 972.056 kb on + strand, within CSW01_19220 at 972.085 kb on - strand, within CSW01_19220 at 972.087 kb on - strand, within CSW01_19220 at 972.089 kb on + strand, within CSW01_19220 at 972.089 kb on + strand, within CSW01_19220 at 972.089 kb on + strand, within CSW01_19220 at 972.097 kb on - strand, within CSW01_19220 at 972.097 kb on - strand, within CSW01_19220 at 972.223 kb on + strand, within CSW01_19220 at 972.223 kb on + strand, within CSW01_19220 at 972.231 kb on - strand, within CSW01_19220 at 972.255 kb on - strand, within CSW01_19220 at 972.255 kb on - strand, within CSW01_19220 at 972.305 kb on + strand, within CSW01_19220 at 972.313 kb on - strand, within CSW01_19220 at 972.313 kb on - strand, within CSW01_19220 at 972.319 kb on + strand, within CSW01_19220
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 969,634 - CSW01_19205 0.87 +0.7 969,783 - -2.0 969,813 + +0.4 969,865 + -1.7 969,913 - -0.6 969,923 + -0.0 969,931 - +0.1 969,933 + -0.1 970,080 - CSW01_19210 0.32 -0.2 970,155 - CSW01_19210 0.62 -2.0 970,399 + +1.2 970,406 + -2.7 970,622 - -0.4 970,663 + +0.2 970,663 + -2.0 970,779 + CSW01_19215 0.20 +0.5 970,799 + CSW01_19215 0.23 -1.6 970,821 - CSW01_19215 0.26 -3.8 970,855 - CSW01_19215 0.30 -1.0 970,857 + CSW01_19215 0.30 -0.3 970,859 - CSW01_19215 0.30 -0.7 970,938 - CSW01_19215 0.40 +0.6 970,946 - CSW01_19215 0.41 -3.4 971,013 + CSW01_19215 0.50 -1.3 971,013 + CSW01_19215 0.50 -2.3 971,036 - CSW01_19215 0.53 -2.6 971,155 + CSW01_19215 0.67 +0.0 971,170 - CSW01_19215 0.69 -2.4 971,180 - CSW01_19215 0.71 -0.6 971,199 - CSW01_19215 0.73 +1.0 971,227 + CSW01_19215 0.76 -3.1 971,232 + CSW01_19215 0.77 -0.7 971,247 + CSW01_19215 0.79 -2.6 971,260 + CSW01_19215 0.81 -1.3 971,270 + CSW01_19215 0.82 -0.8 971,288 - CSW01_19215 0.84 -0.4 971,288 - CSW01_19215 0.84 +0.3 971,290 + CSW01_19215 0.84 -1.2 971,304 + CSW01_19215 0.86 -3.4 971,318 - CSW01_19215 0.88 +0.4 971,330 - CSW01_19215 0.89 +0.9 971,527 + -1.0 971,528 + -0.9 971,567 - -2.4 971,629 - -0.3 971,727 + CSW01_19220 0.16 +0.4 971,879 - CSW01_19220 0.29 -1.1 971,924 + CSW01_19220 0.33 -2.3 971,963 + CSW01_19220 0.36 -0.0 971,970 + CSW01_19220 0.37 -1.1 971,971 - CSW01_19220 0.37 +1.8 971,978 - CSW01_19220 0.37 +0.7 972,045 - CSW01_19220 0.43 -1.5 972,056 + CSW01_19220 0.44 -0.4 972,085 - CSW01_19220 0.47 -0.1 972,087 - CSW01_19220 0.47 +0.8 972,089 + CSW01_19220 0.47 +1.4 972,089 + CSW01_19220 0.47 +0.5 972,089 + CSW01_19220 0.47 +0.3 972,097 - CSW01_19220 0.48 +0.5 972,097 - CSW01_19220 0.48 +0.3 972,223 + CSW01_19220 0.58 -0.9 972,223 + CSW01_19220 0.58 +0.5 972,231 - CSW01_19220 0.59 -1.0 972,255 - CSW01_19220 0.61 -0.9 972,255 - CSW01_19220 0.61 +0.3 972,305 + CSW01_19220 0.66 -0.2 972,313 - CSW01_19220 0.66 +0.4 972,313 - CSW01_19220 0.66 -0.5 972,319 + CSW01_19220 0.67 +0.8
Or see this region's nucleotide sequence