Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19175

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19170 and CSW01_19175 are separated by 65 nucleotidesCSW01_19175 and CSW01_19180 are separated by 10 nucleotidesCSW01_19180 and CSW01_19185 are separated by 0 nucleotides CSW01_19170: CSW01_19170 - Na+/H+ antiporter NhaD, at 961,886 to 963,319 _19170 CSW01_19175: CSW01_19175 - hypothetical protein, at 963,385 to 963,786 _19175 CSW01_19180: CSW01_19180 - cysteine methyltransferase, at 963,797 to 964,270 _19180 CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629 _19185 Position (kb) 963 964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 962.404 kb on + strand, within CSW01_19170at 962.460 kb on - strand, within CSW01_19170at 962.464 kb on + strand, within CSW01_19170at 962.480 kb on - strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.523 kb on + strand, within CSW01_19170at 962.649 kb on + strand, within CSW01_19170at 962.865 kb on + strand, within CSW01_19170at 962.873 kb on - strand, within CSW01_19170at 962.877 kb on + strand, within CSW01_19170at 962.939 kb on + strand, within CSW01_19170at 962.939 kb on + strand, within CSW01_19170at 962.947 kb on - strand, within CSW01_19170at 962.957 kb on + strand, within CSW01_19170at 962.965 kb on - strand, within CSW01_19170at 962.965 kb on - strand, within CSW01_19170at 963.006 kb on - strand, within CSW01_19170at 963.131 kb on - strand, within CSW01_19170at 963.185 kb on - strandat 963.201 kb on - strandat 963.224 kb on + strandat 963.271 kb on + strandat 963.279 kb on - strandat 963.386 kb on + strandat 963.386 kb on + strandat 963.451 kb on - strand, within CSW01_19175at 963.483 kb on - strand, within CSW01_19175at 963.600 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.725 kb on - strand, within CSW01_19175at 963.765 kb on + strandat 963.773 kb on - strandat 963.828 kb on + strandat 963.828 kb on + strandat 963.835 kb on + strandat 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 964.045 kb on - strand, within CSW01_19180at 964.078 kb on - strand, within CSW01_19180at 964.082 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.137 kb on - strand, within CSW01_19180at 964.175 kb on - strand, within CSW01_19180at 964.199 kb on + strand, within CSW01_19180at 964.217 kb on + strand, within CSW01_19180at 964.236 kb on - strandat 964.245 kb on + strandat 964.246 kb on - strandat 964.251 kb on - strandat 964.312 kb on - strandat 964.428 kb on + strand, within CSW01_19185at 964.435 kb on + strand, within CSW01_19185at 964.443 kb on - strand, within CSW01_19185at 964.518 kb on + strand, within CSW01_19185at 964.570 kb on + strand, within CSW01_19185at 964.570 kb on + strand, within CSW01_19185at 964.670 kb on + strand, within CSW01_19185at 964.690 kb on - strand, within CSW01_19185at 964.746 kb on - strand, within CSW01_19185at 964.776 kb on + strand, within CSW01_19185at 964.786 kb on + strand, within CSW01_19185

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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962,404 + CSW01_19170 0.36 +1.4
962,460 - CSW01_19170 0.40 -0.1
962,464 + CSW01_19170 0.40 +1.5
962,480 - CSW01_19170 0.41 -0.5
962,490 + CSW01_19170 0.42 +1.2
962,490 + CSW01_19170 0.42 +0.4
962,490 + CSW01_19170 0.42 -2.3
962,490 + CSW01_19170 0.42 -0.6
962,490 + CSW01_19170 0.42 +0.1
962,490 + CSW01_19170 0.42 -3.2
962,523 + CSW01_19170 0.44 -0.3
962,649 + CSW01_19170 0.53 -1.1
962,865 + CSW01_19170 0.68 +1.1
962,873 - CSW01_19170 0.69 -2.6
962,877 + CSW01_19170 0.69 -1.2
962,939 + CSW01_19170 0.73 -1.4
962,939 + CSW01_19170 0.73 -2.4
962,947 - CSW01_19170 0.74 +1.0
962,957 + CSW01_19170 0.75 -1.7
962,965 - CSW01_19170 0.75 -0.9
962,965 - CSW01_19170 0.75 -1.9
963,006 - CSW01_19170 0.78 +0.4
963,131 - CSW01_19170 0.87 +0.5
963,185 - -0.2
963,201 - -3.4
963,224 + -0.3
963,271 + +1.0
963,279 - +0.2
963,386 + +1.5
963,386 + -0.8
963,451 - CSW01_19175 0.16 -0.6
963,483 - CSW01_19175 0.24 -1.7
963,600 - CSW01_19175 0.53 +0.7
963,650 - CSW01_19175 0.66 -1.1
963,650 - CSW01_19175 0.66 -2.1
963,652 - CSW01_19175 0.66 -0.2
963,652 - CSW01_19175 0.66 +0.3
963,725 - CSW01_19175 0.85 -1.3
963,765 + +0.3
963,773 - +2.1
963,828 + -1.7
963,828 + -3.2
963,835 + -0.9
963,948 + CSW01_19180 0.32 -0.9
963,948 + CSW01_19180 0.32 -2.1
963,948 + CSW01_19180 0.32 +0.9
963,948 + CSW01_19180 0.32 +0.3
963,956 - CSW01_19180 0.34 +0.7
963,956 - CSW01_19180 0.34 -1.5
964,045 - CSW01_19180 0.52 +0.8
964,078 - CSW01_19180 0.59 +0.3
964,082 + CSW01_19180 0.60 +0.5
964,129 + CSW01_19180 0.70 -1.9
964,129 + CSW01_19180 0.70 -0.5
964,129 + CSW01_19180 0.70 -0.5
964,137 - CSW01_19180 0.72 -1.1
964,175 - CSW01_19180 0.80 +0.8
964,199 + CSW01_19180 0.85 +0.9
964,217 + CSW01_19180 0.89 -3.9
964,236 - +0.1
964,245 + +1.3
964,246 - +0.5
964,251 - +1.2
964,312 - -0.1
964,428 + CSW01_19185 0.12 -0.0
964,435 + CSW01_19185 0.12 +1.0
964,443 - CSW01_19185 0.13 +1.5
964,518 + CSW01_19185 0.18 -1.8
964,570 + CSW01_19185 0.22 +0.8
964,570 + CSW01_19185 0.22 +0.2
964,670 + CSW01_19185 0.29 -1.0
964,690 - CSW01_19185 0.31 +0.7
964,746 - CSW01_19185 0.35 -1.7
964,776 + CSW01_19185 0.37 -0.5
964,786 + CSW01_19185 0.38 -1.4

Or see this region's nucleotide sequence