Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19165

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19155 and CSW01_19160 are separated by 213 nucleotidesCSW01_19160 and CSW01_19165 overlap by 4 nucleotidesCSW01_19165 and CSW01_19170 are separated by 391 nucleotides CSW01_19155: CSW01_19155 - glutaredoxin, at 959,447 to 960,085 _19155 CSW01_19160: CSW01_19160 - hypothetical protein, at 960,299 to 960,766 _19160 CSW01_19165: CSW01_19165 - hypothetical protein, at 960,763 to 961,494 _19165 CSW01_19170: CSW01_19170 - Na+/H+ antiporter NhaD, at 961,886 to 963,319 _19170 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 959.860 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.902 kb on + strand, within CSW01_19155at 959.910 kb on - strand, within CSW01_19155at 959.991 kb on - strand, within CSW01_19155at 960.040 kb on + strandat 960.048 kb on - strandat 960.142 kb on - strandat 960.257 kb on + strandat 960.287 kb on + strandat 960.387 kb on - strand, within CSW01_19160at 960.421 kb on - strand, within CSW01_19160at 960.429 kb on - strand, within CSW01_19160at 960.464 kb on + strand, within CSW01_19160at 960.464 kb on - strand, within CSW01_19160at 960.473 kb on + strand, within CSW01_19160at 960.639 kb on + strand, within CSW01_19160at 960.640 kb on + strand, within CSW01_19160at 960.647 kb on - strand, within CSW01_19160at 960.668 kb on + strand, within CSW01_19160at 960.676 kb on + strand, within CSW01_19160at 960.676 kb on + strand, within CSW01_19160at 960.684 kb on - strand, within CSW01_19160at 960.695 kb on + strand, within CSW01_19160at 960.854 kb on - strand, within CSW01_19165at 960.854 kb on - strand, within CSW01_19165at 960.893 kb on - strand, within CSW01_19165at 960.934 kb on - strand, within CSW01_19165at 960.991 kb on + strand, within CSW01_19165at 960.992 kb on + strand, within CSW01_19165at 961.036 kb on - strand, within CSW01_19165at 961.051 kb on - strand, within CSW01_19165at 961.082 kb on - strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.141 kb on + strand, within CSW01_19165at 961.144 kb on - strand, within CSW01_19165at 961.151 kb on - strand, within CSW01_19165at 961.159 kb on - strand, within CSW01_19165at 961.201 kb on + strand, within CSW01_19165at 961.209 kb on - strand, within CSW01_19165at 961.230 kb on + strand, within CSW01_19165at 961.230 kb on + strand, within CSW01_19165at 961.238 kb on - strand, within CSW01_19165at 961.240 kb on - strand, within CSW01_19165at 961.276 kb on + strand, within CSW01_19165at 961.277 kb on - strand, within CSW01_19165at 961.390 kb on - strand, within CSW01_19165at 961.435 kb on + strandat 961.443 kb on - strandat 961.533 kb on - strandat 961.671 kb on + strandat 961.725 kb on + strandat 961.797 kb on + strandat 961.797 kb on + strandat 961.832 kb on - strandat 961.914 kb on - strandat 961.930 kb on + strandat 961.992 kb on + strandat 962.018 kb on + strandat 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.155 kb on - strand, within CSW01_19170at 962.213 kb on + strand, within CSW01_19170at 962.213 kb on + strand, within CSW01_19170at 962.221 kb on - strand, within CSW01_19170at 962.221 kb on - strand, within CSW01_19170at 962.255 kb on + strand, within CSW01_19170at 962.404 kb on + strand, within CSW01_19170at 962.460 kb on - strand, within CSW01_19170at 962.464 kb on + strand, within CSW01_19170at 962.480 kb on - strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170at 962.490 kb on + strand, within CSW01_19170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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959,860 + CSW01_19155 0.65 -0.3
959,897 + CSW01_19155 0.70 +0.4
959,897 + CSW01_19155 0.70 +0.4
959,897 + CSW01_19155 0.70 +1.9
959,900 - CSW01_19155 0.71 -0.1
959,900 - CSW01_19155 0.71 +0.5
959,900 - CSW01_19155 0.71 +0.4
959,900 - CSW01_19155 0.71 -0.6
959,902 + CSW01_19155 0.71 +0.9
959,910 - CSW01_19155 0.72 -1.3
959,991 - CSW01_19155 0.85 +3.1
960,040 + +0.4
960,048 - -0.3
960,142 - -1.1
960,257 + +0.6
960,287 + +0.7
960,387 - CSW01_19160 0.19 +0.4
960,421 - CSW01_19160 0.26 +1.3
960,429 - CSW01_19160 0.28 +1.6
960,464 + CSW01_19160 0.35 -0.7
960,464 - CSW01_19160 0.35 +1.1
960,473 + CSW01_19160 0.37 -0.9
960,639 + CSW01_19160 0.73 +1.4
960,640 + CSW01_19160 0.73 +1.4
960,647 - CSW01_19160 0.74 +0.2
960,668 + CSW01_19160 0.79 -2.3
960,676 + CSW01_19160 0.81 -3.1
960,676 + CSW01_19160 0.81 +1.4
960,684 - CSW01_19160 0.82 +0.4
960,695 + CSW01_19160 0.85 +1.0
960,854 - CSW01_19165 0.12 +1.6
960,854 - CSW01_19165 0.12 +0.9
960,893 - CSW01_19165 0.18 -0.8
960,934 - CSW01_19165 0.23 +0.8
960,991 + CSW01_19165 0.31 +0.4
960,992 + CSW01_19165 0.31 +0.8
961,036 - CSW01_19165 0.37 -1.4
961,051 - CSW01_19165 0.39 -1.0
961,082 - CSW01_19165 0.44 +0.6
961,141 + CSW01_19165 0.52 -0.9
961,141 + CSW01_19165 0.52 -1.0
961,141 + CSW01_19165 0.52 -0.2
961,141 + CSW01_19165 0.52 +0.9
961,144 - CSW01_19165 0.52 -0.4
961,151 - CSW01_19165 0.53 +0.4
961,159 - CSW01_19165 0.54 +0.8
961,201 + CSW01_19165 0.60 -0.4
961,209 - CSW01_19165 0.61 -0.7
961,230 + CSW01_19165 0.64 -2.9
961,230 + CSW01_19165 0.64 +0.8
961,238 - CSW01_19165 0.65 -3.2
961,240 - CSW01_19165 0.65 +2.2
961,276 + CSW01_19165 0.70 +0.1
961,277 - CSW01_19165 0.70 +0.5
961,390 - CSW01_19165 0.86 -0.4
961,435 + +0.2
961,443 - -1.0
961,533 - +0.2
961,671 + -2.1
961,725 + +1.0
961,797 + -2.8
961,797 + -0.8
961,832 - -0.1
961,914 - -0.1
961,930 + -0.7
961,992 + -1.3
962,018 + +0.9
962,155 - CSW01_19170 0.19 -0.2
962,155 - CSW01_19170 0.19 +0.7
962,155 - CSW01_19170 0.19 -1.1
962,155 - CSW01_19170 0.19 +0.0
962,213 + CSW01_19170 0.23 +1.4
962,213 + CSW01_19170 0.23 +1.3
962,221 - CSW01_19170 0.23 +0.3
962,221 - CSW01_19170 0.23 +1.4
962,255 + CSW01_19170 0.26 -2.2
962,404 + CSW01_19170 0.36 +1.4
962,460 - CSW01_19170 0.40 -0.1
962,464 + CSW01_19170 0.40 +1.5
962,480 - CSW01_19170 0.41 -0.5
962,490 + CSW01_19170 0.42 +1.2
962,490 + CSW01_19170 0.42 +0.4
962,490 + CSW01_19170 0.42 -2.3
962,490 + CSW01_19170 0.42 -0.6
962,490 + CSW01_19170 0.42 +0.1
962,490 + CSW01_19170 0.42 -3.2

Or see this region's nucleotide sequence