Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18975

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18965 and CSW01_18970 are separated by 511 nucleotidesCSW01_18970 and CSW01_18975 are separated by 8 nucleotidesCSW01_18975 and CSW01_18980 are separated by 56 nucleotidesCSW01_18980 and CSW01_18985 are separated by 32 nucleotides CSW01_18965: CSW01_18965 - DUF1255 domain-containing protein, at 915,243 to 915,557 _18965 CSW01_18970: CSW01_18970 - DUF2850 domain-containing protein, at 916,069 to 916,509 _18970 CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822 _18975 CSW01_18980: CSW01_18980 - hypothetical protein, at 917,879 to 918,052 _18980 CSW01_18985: CSW01_18985 - methyl-accepting chemotaxis protein, at 918,085 to 919,770 _18985 Position (kb) 916 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 915.554 kb on - strandat 915.586 kb on - strandat 915.590 kb on + strandat 915.632 kb on + strandat 915.646 kb on + strandat 915.654 kb on - strandat 915.654 kb on - strandat 915.672 kb on - strandat 915.673 kb on - strandat 915.781 kb on - strandat 915.803 kb on - strandat 915.875 kb on - strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.012 kb on - strandat 916.141 kb on - strand, within CSW01_18970at 916.156 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.392 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.397 kb on + strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.400 kb on - strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.424 kb on + strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.432 kb on - strand, within CSW01_18970at 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.467 kb on + strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.475 kb on - strandat 916.526 kb on + strandat 916.561 kb on - strandat 916.592 kb on - strandat 916.600 kb on + strandat 916.608 kb on - strandat 916.613 kb on - strandat 916.736 kb on - strand, within CSW01_18975at 916.797 kb on + strand, within CSW01_18975at 916.798 kb on - strand, within CSW01_18975at 916.838 kb on + strand, within CSW01_18975at 916.918 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.966 kb on + strand, within CSW01_18975at 916.974 kb on - strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.976 kb on + strand, within CSW01_18975at 916.987 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.213 kb on - strand, within CSW01_18975at 917.273 kb on + strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.511 kb on - strand, within CSW01_18975at 917.518 kb on - strand, within CSW01_18975at 917.579 kb on + strand, within CSW01_18975at 917.587 kb on - strand, within CSW01_18975at 917.637 kb on + strand, within CSW01_18975at 917.705 kb on - strandat 917.729 kb on + strandat 917.729 kb on + strandat 918.270 kb on - strand, within CSW01_18985at 918.325 kb on + strand, within CSW01_18985at 918.365 kb on - strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.420 kb on - strand, within CSW01_18985at 918.452 kb on - strand, within CSW01_18985at 918.580 kb on - strand, within CSW01_18985at 918.593 kb on + strand, within CSW01_18985at 918.601 kb on - strand, within CSW01_18985at 918.641 kb on + strand, within CSW01_18985at 918.656 kb on + strand, within CSW01_18985

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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915,554 - -0.9
915,586 - +0.6
915,590 + +0.7
915,632 + +0.8
915,646 + -1.5
915,654 - -0.2
915,654 - -1.4
915,672 - +0.0
915,673 - +0.1
915,781 - -0.2
915,803 - -1.1
915,875 - -2.4
915,999 + -0.4
915,999 + -0.3
915,999 + -0.5
915,999 + -0.7
915,999 + -0.8
916,007 - -0.1
916,007 - +0.1
916,007 - -1.5
916,007 - -0.3
916,007 - +0.1
916,012 - -2.5
916,141 - CSW01_18970 0.16 -0.8
916,156 + CSW01_18970 0.20 -2.4
916,392 + CSW01_18970 0.73 +1.0
916,392 + CSW01_18970 0.73 +0.6
916,397 + CSW01_18970 0.74 -2.2
916,397 + CSW01_18970 0.74 -0.4
916,400 - CSW01_18970 0.75 +1.4
916,400 - CSW01_18970 0.75 -2.1
916,424 + CSW01_18970 0.80 -2.2
916,424 + CSW01_18970 0.80 +0.5
916,424 + CSW01_18970 0.80 +0.8
916,432 - CSW01_18970 0.82 +0.6
916,432 - CSW01_18970 0.82 +0.1
916,432 - CSW01_18970 0.82 +0.6
916,467 + -1.1
916,467 + -1.9
916,467 + +1.1
916,467 + -1.3
916,475 - -2.9
916,475 - -1.5
916,475 - +0.4
916,526 + +0.2
916,561 - +0.8
916,592 - +1.0
916,600 + -0.3
916,608 - -2.1
916,613 - -2.6
916,736 - CSW01_18975 0.17 -0.7
916,797 + CSW01_18975 0.21 +0.5
916,798 - CSW01_18975 0.21 +2.7
916,838 + CSW01_18975 0.25 -1.9
916,918 + CSW01_18975 0.31 -1.0
916,966 + CSW01_18975 0.34 -0.4
916,966 + CSW01_18975 0.34 -0.9
916,974 - CSW01_18975 0.35 -3.5
916,976 + CSW01_18975 0.35 -1.5
916,976 + CSW01_18975 0.35 -1.2
916,976 + CSW01_18975 0.35 +0.4
916,987 + CSW01_18975 0.36 +0.8
917,204 + CSW01_18975 0.53 +0.4
917,204 + CSW01_18975 0.53 -0.4
917,213 - CSW01_18975 0.53 -1.3
917,273 + CSW01_18975 0.58 -1.9
917,474 - CSW01_18975 0.73 +0.4
917,474 - CSW01_18975 0.73 +0.7
917,511 - CSW01_18975 0.76 -1.2
917,518 - CSW01_18975 0.77 +0.4
917,579 + CSW01_18975 0.81 +0.6
917,587 - CSW01_18975 0.82 -0.2
917,637 + CSW01_18975 0.86 -0.3
917,705 - +1.8
917,729 + -0.4
917,729 + -0.8
918,270 - CSW01_18985 0.11 -0.1
918,325 + CSW01_18985 0.14 +0.2
918,365 - CSW01_18985 0.17 +0.1
918,404 + CSW01_18985 0.19 -1.0
918,404 + CSW01_18985 0.19 -1.0
918,420 - CSW01_18985 0.20 -0.4
918,452 - CSW01_18985 0.22 +0.7
918,580 - CSW01_18985 0.29 -2.2
918,593 + CSW01_18985 0.30 +0.8
918,601 - CSW01_18985 0.31 -0.7
918,641 + CSW01_18985 0.33 -1.6
918,656 + CSW01_18985 0.34 +0.7

Or see this region's nucleotide sequence