Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18855 and CSW01_18860 are separated by 672 nucleotides CSW01_18860 and CSW01_18865 are separated by 222 nucleotides CSW01_18865 and CSW01_18870 are separated by 4 nucleotides
CSW01_18855: CSW01_18855 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 894,195 to 895,376
_18855
CSW01_18860: CSW01_18860 - maltose/maltodextrin import ATP-binding protein MalK, at 896,049 to 897,170
_18860
CSW01_18865: CSW01_18865 - spermidine acetyltransferase, at 897,393 to 897,914
_18865
CSW01_18870: CSW01_18870 - transcriptional regulator, at 897,919 to 898,164
_18870
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.128 kb on - strand, within CSW01_18855 at 895.349 kb on + strand at 895.352 kb on + strand at 895.352 kb on - strand at 895.357 kb on - strand at 895.362 kb on - strand at 895.362 kb on - strand at 895.419 kb on + strand at 895.471 kb on + strand at 895.478 kb on + strand at 895.478 kb on + strand at 895.617 kb on - strand at 895.621 kb on + strand at 895.624 kb on - strand at 895.628 kb on + strand at 895.633 kb on - strand at 895.761 kb on + strand at 895.838 kb on - strand at 896.089 kb on + strand at 896.090 kb on - strand at 896.145 kb on - strand at 896.157 kb on + strand at 896.191 kb on + strand, within CSW01_18860 at 896.191 kb on + strand, within CSW01_18860 at 896.210 kb on + strand, within CSW01_18860 at 896.346 kb on - strand, within CSW01_18860 at 896.352 kb on - strand, within CSW01_18860 at 896.354 kb on + strand, within CSW01_18860 at 896.466 kb on - strand, within CSW01_18860 at 896.499 kb on - strand, within CSW01_18860 at 896.501 kb on + strand, within CSW01_18860 at 896.597 kb on + strand, within CSW01_18860 at 896.597 kb on + strand, within CSW01_18860 at 896.645 kb on - strand, within CSW01_18860 at 896.896 kb on - strand, within CSW01_18860 at 896.912 kb on + strand, within CSW01_18860 at 896.922 kb on + strand, within CSW01_18860 at 896.925 kb on - strand, within CSW01_18860 at 896.999 kb on + strand, within CSW01_18860 at 897.006 kb on + strand, within CSW01_18860 at 897.015 kb on - strand, within CSW01_18860 at 897.051 kb on - strand, within CSW01_18860 at 897.195 kb on + strand at 897.208 kb on - strand at 897.235 kb on + strand at 897.243 kb on + strand at 897.279 kb on - strand at 897.302 kb on + strand at 897.310 kb on - strand at 897.310 kb on - strand at 897.310 kb on - strand at 897.492 kb on - strand, within CSW01_18865 at 897.635 kb on - strand, within CSW01_18865 at 897.675 kb on + strand, within CSW01_18865 at 897.675 kb on + strand, within CSW01_18865 at 897.773 kb on + strand, within CSW01_18865 at 897.773 kb on + strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.882 kb on - strand at 897.924 kb on - strand at 897.962 kb on - strand, within CSW01_18870 at 898.003 kb on + strand, within CSW01_18870 at 898.013 kb on - strand, within CSW01_18870 at 898.013 kb on - strand, within CSW01_18870 at 898.053 kb on - strand, within CSW01_18870 at 898.097 kb on - strand, within CSW01_18870
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 895,128 - CSW01_18855 0.79 +0.6 895,349 + -0.5 895,352 + +1.0 895,352 - -0.7 895,357 - -0.8 895,362 - +0.5 895,362 - -2.2 895,419 + -0.2 895,471 + +0.5 895,478 + -2.2 895,478 + -0.1 895,617 - -3.4 895,621 + +0.4 895,624 - -2.7 895,628 + +0.8 895,633 - +0.9 895,761 + +0.3 895,838 - -0.2 896,089 + -0.3 896,090 - -2.5 896,145 - -2.2 896,157 + -1.9 896,191 + CSW01_18860 0.13 -0.7 896,191 + CSW01_18860 0.13 -3.4 896,210 + CSW01_18860 0.14 -2.0 896,346 - CSW01_18860 0.26 +0.4 896,352 - CSW01_18860 0.27 +0.2 896,354 + CSW01_18860 0.27 -0.0 896,466 - CSW01_18860 0.37 +0.7 896,499 - CSW01_18860 0.40 -0.1 896,501 + CSW01_18860 0.40 +1.1 896,597 + CSW01_18860 0.49 -0.4 896,597 + CSW01_18860 0.49 -0.6 896,645 - CSW01_18860 0.53 -0.8 896,896 - CSW01_18860 0.75 -0.8 896,912 + CSW01_18860 0.77 -0.1 896,922 + CSW01_18860 0.78 -2.6 896,925 - CSW01_18860 0.78 +0.6 896,999 + CSW01_18860 0.85 -0.0 897,006 + CSW01_18860 0.85 +0.2 897,015 - CSW01_18860 0.86 -0.9 897,051 - CSW01_18860 0.89 -0.3 897,195 + +2.1 897,208 - +1.1 897,235 + +0.2 897,243 + +0.2 897,279 - -2.6 897,302 + -0.4 897,310 - +0.4 897,310 - -1.2 897,310 - +0.8 897,492 - CSW01_18865 0.19 +0.9 897,635 - CSW01_18865 0.46 -1.8 897,675 + CSW01_18865 0.54 +1.6 897,675 + CSW01_18865 0.54 -2.3 897,773 + CSW01_18865 0.73 -0.8 897,773 + CSW01_18865 0.73 -0.3 897,781 - CSW01_18865 0.74 +0.0 897,781 - CSW01_18865 0.74 -0.7 897,781 - CSW01_18865 0.74 +1.2 897,781 - CSW01_18865 0.74 +0.0 897,882 - -0.7 897,924 - -2.8 897,962 - CSW01_18870 0.17 +0.4 898,003 + CSW01_18870 0.34 -1.4 898,013 - CSW01_18870 0.38 +0.6 898,013 - CSW01_18870 0.38 -1.4 898,053 - CSW01_18870 0.54 -0.2 898,097 - CSW01_18870 0.72 -2.5
Or see this region's nucleotide sequence