Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18660

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18655 and CSW01_18660 are separated by 135 nucleotidesCSW01_18660 and CSW01_18665 are separated by 18 nucleotides CSW01_18655: CSW01_18655 - hypothetical protein, at 854,218 to 855,054 _18655 CSW01_18660: CSW01_18660 - glycerate kinase, at 855,190 to 856,323 _18660 CSW01_18665: CSW01_18665 - permease, at 856,342 to 857,694 _18665 Position (kb) 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.350 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.387 kb on + strand, within CSW01_18655at 854.395 kb on - strand, within CSW01_18655at 854.413 kb on + strand, within CSW01_18655at 854.423 kb on + strand, within CSW01_18655at 854.453 kb on + strand, within CSW01_18655at 854.506 kb on + strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.521 kb on + strand, within CSW01_18655at 854.522 kb on + strand, within CSW01_18655at 854.530 kb on - strand, within CSW01_18655at 854.678 kb on + strand, within CSW01_18655at 854.926 kb on - strand, within CSW01_18655at 854.938 kb on - strand, within CSW01_18655at 855.028 kb on - strandat 855.028 kb on - strandat 855.119 kb on - strandat 855.241 kb on + strandat 855.321 kb on + strand, within CSW01_18660at 855.350 kb on - strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.383 kb on - strand, within CSW01_18660at 855.453 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.510 kb on - strand, within CSW01_18660at 855.593 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.705 kb on + strand, within CSW01_18660at 855.747 kb on - strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.917 kb on + strand, within CSW01_18660at 855.965 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.030 kb on - strand, within CSW01_18660at 856.040 kb on + strand, within CSW01_18660at 856.185 kb on + strand, within CSW01_18660at 856.229 kb on + strandat 856.357 kb on + strandat 856.357 kb on + strandat 856.365 kb on + strandat 856.365 kb on + strandat 856.395 kb on + strandat 856.431 kb on + strandat 856.534 kb on - strand, within CSW01_18665at 856.584 kb on + strand, within CSW01_18665at 856.600 kb on - strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.726 kb on - strand, within CSW01_18665at 856.867 kb on - strand, within CSW01_18665at 856.902 kb on + strand, within CSW01_18665at 856.961 kb on - strand, within CSW01_18665at 857.013 kb on - strand, within CSW01_18665at 857.039 kb on - strand, within CSW01_18665at 857.040 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.159 kb on - strand, within CSW01_18665at 857.214 kb on + strand, within CSW01_18665at 857.244 kb on - strand, within CSW01_18665at 857.256 kb on - strand, within CSW01_18665at 857.273 kb on + strand, within CSW01_18665at 857.283 kb on + strand, within CSW01_18665

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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854,318 + CSW01_18655 0.12 +1.5
854,318 + CSW01_18655 0.12 +1.1
854,318 + CSW01_18655 0.12 +1.1
854,318 + CSW01_18655 0.12 -0.5
854,318 + CSW01_18655 0.12 -0.6
854,318 + CSW01_18655 0.12 -0.3
854,318 + CSW01_18655 0.12 +0.5
854,318 + CSW01_18655 0.12 -2.2
854,318 + CSW01_18655 0.12 +1.1
854,318 + CSW01_18655 0.12 +0.9
854,326 - CSW01_18655 0.13 +0.9
854,326 - CSW01_18655 0.13 +0.8
854,326 - CSW01_18655 0.13 -0.3
854,326 - CSW01_18655 0.13 +0.6
854,326 - CSW01_18655 0.13 +1.5
854,326 - CSW01_18655 0.13 -1.6
854,326 - CSW01_18655 0.13 +1.1
854,326 - CSW01_18655 0.13 +0.1
854,326 - CSW01_18655 0.13 +0.1
854,326 - CSW01_18655 0.13 -2.7
854,326 - CSW01_18655 0.13 -0.8
854,326 - CSW01_18655 0.13 -0.3
854,350 + CSW01_18655 0.16 -1.4
854,382 + CSW01_18655 0.20 -0.9
854,382 + CSW01_18655 0.20 -1.3
854,387 + CSW01_18655 0.20 +2.0
854,395 - CSW01_18655 0.21 -0.4
854,413 + CSW01_18655 0.23 +1.5
854,423 + CSW01_18655 0.24 +1.2
854,453 + CSW01_18655 0.28 +1.7
854,506 + CSW01_18655 0.34 +0.4
854,514 - CSW01_18655 0.35 -0.8
854,514 - CSW01_18655 0.35 -2.0
854,521 + CSW01_18655 0.36 -0.5
854,522 + CSW01_18655 0.36 -0.6
854,530 - CSW01_18655 0.37 +0.7
854,678 + CSW01_18655 0.55 -1.8
854,926 - CSW01_18655 0.85 -0.7
854,938 - CSW01_18655 0.86 -0.7
855,028 - +0.1
855,028 - +1.0
855,119 - -1.6
855,241 + -0.6
855,321 + CSW01_18660 0.12 +2.2
855,350 - CSW01_18660 0.14 +1.4
855,375 + CSW01_18660 0.16 +0.5
855,375 + CSW01_18660 0.16 -2.7
855,383 - CSW01_18660 0.17 +0.0
855,453 - CSW01_18660 0.23 -0.2
855,508 - CSW01_18660 0.28 +0.4
855,508 - CSW01_18660 0.28 +0.4
855,510 - CSW01_18660 0.28 +0.8
855,593 - CSW01_18660 0.36 +1.2
855,603 - CSW01_18660 0.36 -0.5
855,603 - CSW01_18660 0.36 -1.9
855,705 + CSW01_18660 0.45 -0.3
855,747 - CSW01_18660 0.49 +0.1
855,771 + CSW01_18660 0.51 -0.4
855,771 + CSW01_18660 0.51 -1.8
855,771 + CSW01_18660 0.51 +1.5
855,917 + CSW01_18660 0.64 -0.4
855,965 + CSW01_18660 0.68 -2.5
856,002 + CSW01_18660 0.72 -0.0
856,002 + CSW01_18660 0.72 -4.3
856,002 + CSW01_18660 0.72 -1.5
856,002 + CSW01_18660 0.72 +0.2
856,010 - CSW01_18660 0.72 -0.0
856,010 - CSW01_18660 0.72 -0.8
856,010 - CSW01_18660 0.72 +0.8
856,010 - CSW01_18660 0.72 -0.2
856,010 - CSW01_18660 0.72 +2.2
856,030 - CSW01_18660 0.74 -0.8
856,040 + CSW01_18660 0.75 +0.2
856,185 + CSW01_18660 0.88 +1.8
856,229 + +0.9
856,357 + +1.4
856,357 + -2.1
856,365 + -3.0
856,365 + +1.1
856,395 + -1.0
856,431 + +2.0
856,534 - CSW01_18665 0.14 -0.8
856,584 + CSW01_18665 0.18 -3.3
856,600 - CSW01_18665 0.19 +0.7
856,705 + CSW01_18665 0.27 +0.6
856,705 + CSW01_18665 0.27 -3.7
856,726 - CSW01_18665 0.28 -1.3
856,867 - CSW01_18665 0.39 -2.0
856,902 + CSW01_18665 0.41 -2.3
856,961 - CSW01_18665 0.46 -1.4
857,013 - CSW01_18665 0.50 -0.6
857,039 - CSW01_18665 0.52 +0.3
857,040 - CSW01_18665 0.52 +0.1
857,121 - CSW01_18665 0.58 +0.1
857,121 - CSW01_18665 0.58 +0.6
857,159 - CSW01_18665 0.60 -0.3
857,214 + CSW01_18665 0.64 +0.2
857,244 - CSW01_18665 0.67 +2.1
857,256 - CSW01_18665 0.68 -2.5
857,273 + CSW01_18665 0.69 +1.2
857,283 + CSW01_18665 0.70 -2.9

Or see this region's nucleotide sequence