Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18300 and CSW01_18305 are separated by 1 nucleotides CSW01_18305 and CSW01_18310 are separated by 55 nucleotides CSW01_18310 and CSW01_18315 are separated by 62 nucleotides CSW01_18315 and CSW01_18320 are separated by 141 nucleotides
CSW01_18300: CSW01_18300 - LysR family transcriptional regulator, at 774,020 to 774,994
_18300
CSW01_18305: CSW01_18305 - hypothetical protein, at 774,996 to 775,190
_18305
CSW01_18310: CSW01_18310 - hypothetical protein, at 775,246 to 775,431
_18310
CSW01_18315: CSW01_18315 - methyltransferase, at 775,494 to 776,126
_18315
CSW01_18320: CSW01_18320 - LysR family transcriptional regulator, at 776,268 to 777,146
_18320
Position (kb) 775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 774.276 kb on + strand, within CSW01_18300 at 774.276 kb on + strand, within CSW01_18300 at 774.284 kb on - strand, within CSW01_18300 at 774.292 kb on - strand, within CSW01_18300 at 774.319 kb on - strand, within CSW01_18300 at 774.338 kb on - strand, within CSW01_18300 at 774.410 kb on - strand, within CSW01_18300 at 774.419 kb on + strand, within CSW01_18300 at 774.450 kb on + strand, within CSW01_18300 at 774.485 kb on - strand, within CSW01_18300 at 774.553 kb on + strand, within CSW01_18300 at 774.554 kb on + strand, within CSW01_18300 at 774.562 kb on - strand, within CSW01_18300 at 774.629 kb on - strand, within CSW01_18300 at 774.629 kb on - strand, within CSW01_18300 at 774.727 kb on + strand, within CSW01_18300 at 774.749 kb on + strand, within CSW01_18300 at 774.881 kb on + strand, within CSW01_18300 at 774.896 kb on - strand, within CSW01_18300 at 774.908 kb on + strand at 774.953 kb on + strand at 775.076 kb on + strand, within CSW01_18305 at 775.393 kb on - strand, within CSW01_18310 at 775.406 kb on + strand, within CSW01_18310 at 775.547 kb on + strand at 775.581 kb on - strand, within CSW01_18315 at 775.581 kb on - strand, within CSW01_18315 at 775.585 kb on + strand, within CSW01_18315 at 775.598 kb on - strand, within CSW01_18315 at 775.600 kb on + strand, within CSW01_18315 at 775.876 kb on - strand, within CSW01_18315 at 775.886 kb on - strand, within CSW01_18315 at 775.937 kb on - strand, within CSW01_18315 at 776.153 kb on - strand at 776.246 kb on + strand at 776.265 kb on + strand at 776.265 kb on + strand at 776.273 kb on - strand at 776.273 kb on - strand at 776.273 kb on - strand at 776.313 kb on + strand at 776.329 kb on - strand at 776.408 kb on + strand, within CSW01_18320 at 776.408 kb on + strand, within CSW01_18320 at 776.408 kb on + strand, within CSW01_18320 at 776.428 kb on + strand, within CSW01_18320
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 774,276 + CSW01_18300 0.26 -2.2 774,276 + CSW01_18300 0.26 -1.9 774,284 - CSW01_18300 0.27 -0.1 774,292 - CSW01_18300 0.28 -0.6 774,319 - CSW01_18300 0.31 -0.6 774,338 - CSW01_18300 0.33 +1.1 774,410 - CSW01_18300 0.40 -0.7 774,419 + CSW01_18300 0.41 -0.4 774,450 + CSW01_18300 0.44 -2.2 774,485 - CSW01_18300 0.48 +1.1 774,553 + CSW01_18300 0.55 +0.1 774,554 + CSW01_18300 0.55 +0.7 774,562 - CSW01_18300 0.56 -0.2 774,629 - CSW01_18300 0.62 -0.0 774,629 - CSW01_18300 0.62 +0.5 774,727 + CSW01_18300 0.73 +0.3 774,749 + CSW01_18300 0.75 +0.1 774,881 + CSW01_18300 0.88 -0.6 774,896 - CSW01_18300 0.90 +0.3 774,908 + -0.0 774,953 + -3.4 775,076 + CSW01_18305 0.41 -1.5 775,393 - CSW01_18310 0.79 -0.7 775,406 + CSW01_18310 0.86 -0.5 775,547 + -1.2 775,581 - CSW01_18315 0.14 -1.8 775,581 - CSW01_18315 0.14 -1.7 775,585 + CSW01_18315 0.14 +0.5 775,598 - CSW01_18315 0.16 -4.4 775,600 + CSW01_18315 0.17 -0.8 775,876 - CSW01_18315 0.60 -2.1 775,886 - CSW01_18315 0.62 +1.1 775,937 - CSW01_18315 0.70 -1.5 776,153 - +0.4 776,246 + +0.4 776,265 + +0.5 776,265 + +0.2 776,273 - -1.9 776,273 - -0.2 776,273 - +1.3 776,313 + +0.8 776,329 - -2.7 776,408 + CSW01_18320 0.16 -0.3 776,408 + CSW01_18320 0.16 +0.4 776,408 + CSW01_18320 0.16 -2.1 776,428 + CSW01_18320 0.18 -1.1
Or see this region's nucleotide sequence