Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18235

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18230 and CSW01_18235 are separated by 0 nucleotidesCSW01_18235 and CSW01_18240 are separated by 368 nucleotidesCSW01_18240 and CSW01_18245 are separated by 2 nucleotides CSW01_18230: CSW01_18230 - agmatinase, at 758,607 to 759,536 _18230 CSW01_18235: CSW01_18235 - arginine decarboxylase, at 759,537 to 761,501 _18235 CSW01_18240: CSW01_18240 - mechanosensitive ion channel protein, at 761,870 to 762,454 _18240 CSW01_18245: CSW01_18245 - magnesium transporter MgtE, at 762,457 to 763,820 _18245 Position (kb) 759 760 761 762Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 758.591 kb on - strandat 758.595 kb on + strandat 758.648 kb on + strandat 758.656 kb on - strandat 758.728 kb on - strand, within CSW01_18230at 758.743 kb on - strand, within CSW01_18230at 758.789 kb on - strand, within CSW01_18230at 758.814 kb on - strand, within CSW01_18230at 758.857 kb on - strand, within CSW01_18230at 758.916 kb on + strand, within CSW01_18230at 758.949 kb on + strand, within CSW01_18230at 759.007 kb on - strand, within CSW01_18230at 759.033 kb on + strand, within CSW01_18230at 759.039 kb on - strand, within CSW01_18230at 759.039 kb on - strand, within CSW01_18230at 759.159 kb on - strand, within CSW01_18230at 759.159 kb on - strand, within CSW01_18230at 759.382 kb on - strand, within CSW01_18230at 759.408 kb on + strand, within CSW01_18230at 759.462 kb on - strandat 759.491 kb on + strandat 759.491 kb on + strandat 759.569 kb on + strandat 759.695 kb on - strandat 759.806 kb on + strand, within CSW01_18235at 759.850 kb on - strand, within CSW01_18235at 759.867 kb on + strand, within CSW01_18235at 759.939 kb on + strand, within CSW01_18235at 759.949 kb on - strand, within CSW01_18235at 759.976 kb on + strand, within CSW01_18235at 760.038 kb on - strand, within CSW01_18235at 760.040 kb on + strand, within CSW01_18235at 760.066 kb on + strand, within CSW01_18235at 760.136 kb on + strand, within CSW01_18235at 760.144 kb on - strand, within CSW01_18235at 760.158 kb on + strand, within CSW01_18235at 760.163 kb on + strand, within CSW01_18235at 760.269 kb on + strand, within CSW01_18235at 760.279 kb on - strand, within CSW01_18235at 760.281 kb on + strand, within CSW01_18235at 760.281 kb on + strand, within CSW01_18235at 760.281 kb on + strand, within CSW01_18235at 760.289 kb on - strand, within CSW01_18235at 760.460 kb on - strand, within CSW01_18235at 760.503 kb on - strand, within CSW01_18235at 760.566 kb on - strand, within CSW01_18235at 760.590 kb on + strand, within CSW01_18235at 760.630 kb on - strand, within CSW01_18235at 760.630 kb on - strand, within CSW01_18235at 760.630 kb on - strand, within CSW01_18235at 760.642 kb on + strand, within CSW01_18235at 760.662 kb on - strand, within CSW01_18235at 760.691 kb on - strand, within CSW01_18235at 760.702 kb on - strand, within CSW01_18235at 760.766 kb on - strand, within CSW01_18235at 760.812 kb on + strand, within CSW01_18235at 760.894 kb on + strand, within CSW01_18235at 760.904 kb on + strand, within CSW01_18235at 760.969 kb on + strand, within CSW01_18235at 760.971 kb on + strand, within CSW01_18235at 761.066 kb on + strand, within CSW01_18235at 761.066 kb on + strand, within CSW01_18235at 761.074 kb on - strand, within CSW01_18235at 761.160 kb on - strand, within CSW01_18235at 761.315 kb on - strandat 761.402 kb on + strandat 761.457 kb on + strandat 761.499 kb on - strandat 761.510 kb on + strandat 761.539 kb on + strandat 761.686 kb on - strandat 761.760 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.768 kb on + strandat 761.771 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.956 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 762.053 kb on + strand, within CSW01_18240at 762.118 kb on + strand, within CSW01_18240at 762.120 kb on + strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.135 kb on + strand, within CSW01_18240at 762.185 kb on + strand, within CSW01_18240at 762.188 kb on - strand, within CSW01_18240at 762.198 kb on - strand, within CSW01_18240at 762.291 kb on - strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.335 kb on - strand, within CSW01_18240at 762.439 kb on + strandat 762.447 kb on - strandat 762.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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758,591 - +0.5
758,595 + +1.2
758,648 + +0.7
758,656 - +2.3
758,728 - CSW01_18230 0.13 +0.5
758,743 - CSW01_18230 0.15 +1.8
758,789 - CSW01_18230 0.20 -3.0
758,814 - CSW01_18230 0.22 +0.7
758,857 - CSW01_18230 0.27 -0.3
758,916 + CSW01_18230 0.33 -1.6
758,949 + CSW01_18230 0.37 +1.2
759,007 - CSW01_18230 0.43 +2.4
759,033 + CSW01_18230 0.46 -0.8
759,039 - CSW01_18230 0.46 +2.7
759,039 - CSW01_18230 0.46 -0.1
759,159 - CSW01_18230 0.59 -0.1
759,159 - CSW01_18230 0.59 +1.0
759,382 - CSW01_18230 0.83 +1.4
759,408 + CSW01_18230 0.86 -2.0
759,462 - +1.3
759,491 + +0.5
759,491 + +0.5
759,569 + +0.3
759,695 - -1.6
759,806 + CSW01_18235 0.14 +0.8
759,850 - CSW01_18235 0.16 +0.8
759,867 + CSW01_18235 0.17 +1.1
759,939 + CSW01_18235 0.20 +0.9
759,949 - CSW01_18235 0.21 -0.6
759,976 + CSW01_18235 0.22 +0.2
760,038 - CSW01_18235 0.25 +2.0
760,040 + CSW01_18235 0.26 -0.5
760,066 + CSW01_18235 0.27 +1.1
760,136 + CSW01_18235 0.30 +0.2
760,144 - CSW01_18235 0.31 +2.0
760,158 + CSW01_18235 0.32 +0.5
760,163 + CSW01_18235 0.32 -0.7
760,269 + CSW01_18235 0.37 +0.8
760,279 - CSW01_18235 0.38 -0.3
760,281 + CSW01_18235 0.38 +2.1
760,281 + CSW01_18235 0.38 +0.4
760,281 + CSW01_18235 0.38 -2.1
760,289 - CSW01_18235 0.38 +0.5
760,460 - CSW01_18235 0.47 +1.0
760,503 - CSW01_18235 0.49 -0.6
760,566 - CSW01_18235 0.52 -1.7
760,590 + CSW01_18235 0.54 +1.1
760,630 - CSW01_18235 0.56 +1.5
760,630 - CSW01_18235 0.56 -1.2
760,630 - CSW01_18235 0.56 -0.7
760,642 + CSW01_18235 0.56 -1.4
760,662 - CSW01_18235 0.57 -2.8
760,691 - CSW01_18235 0.59 -0.2
760,702 - CSW01_18235 0.59 +0.3
760,766 - CSW01_18235 0.63 +0.2
760,812 + CSW01_18235 0.65 +0.4
760,894 + CSW01_18235 0.69 +0.1
760,904 + CSW01_18235 0.70 +1.2
760,969 + CSW01_18235 0.73 +0.6
760,971 + CSW01_18235 0.73 +0.7
761,066 + CSW01_18235 0.78 +1.4
761,066 + CSW01_18235 0.78 +1.5
761,074 - CSW01_18235 0.78 -1.7
761,160 - CSW01_18235 0.83 +0.6
761,315 - +1.1
761,402 + +0.6
761,457 + +1.3
761,499 - +1.5
761,510 + +0.8
761,539 + -3.0
761,686 - +1.8
761,760 + -0.6
761,763 + -0.6
761,763 + -0.5
761,763 + -0.6
761,763 + +0.9
761,768 + -3.0
761,771 - -0.9
761,781 - +1.5
761,781 - -0.5
761,781 - +1.4
761,956 + CSW01_18240 0.15 +0.8
761,982 + CSW01_18240 0.19 -1.3
761,982 + CSW01_18240 0.19 -1.2
761,982 + CSW01_18240 0.19 -1.7
761,982 + CSW01_18240 0.19 -1.4
761,982 + CSW01_18240 0.19 +0.4
761,982 + CSW01_18240 0.19 +0.4
761,989 - CSW01_18240 0.20 -0.7
761,989 - CSW01_18240 0.20 -1.5
761,989 - CSW01_18240 0.20 -0.2
761,990 - CSW01_18240 0.21 -0.8
761,990 - CSW01_18240 0.21 +0.4
761,990 - CSW01_18240 0.21 -1.4
761,990 - CSW01_18240 0.21 +0.3
761,990 - CSW01_18240 0.21 -1.3
761,990 - CSW01_18240 0.21 +1.9
761,990 - CSW01_18240 0.21 -1.1
761,990 - CSW01_18240 0.21 +1.2
761,990 - CSW01_18240 0.21 -3.9
762,053 + CSW01_18240 0.31 -0.2
762,118 + CSW01_18240 0.42 -0.8
762,120 + CSW01_18240 0.43 -0.5
762,128 - CSW01_18240 0.44 -1.5
762,128 - CSW01_18240 0.44 -0.8
762,135 + CSW01_18240 0.45 +2.4
762,185 + CSW01_18240 0.54 -3.2
762,188 - CSW01_18240 0.54 -3.8
762,198 - CSW01_18240 0.56 +0.1
762,291 - CSW01_18240 0.72 +0.4
762,327 + CSW01_18240 0.78 -1.9
762,327 + CSW01_18240 0.78 +1.5
762,327 + CSW01_18240 0.78 +0.8
762,335 - CSW01_18240 0.79 +0.1
762,439 + +0.4
762,447 - -1.8
762,447 - +0.6

Or see this region's nucleotide sequence