Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18060

Experiment: ICP3_phage_41.1_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18050 and CSW01_18055 are separated by 121 nucleotidesCSW01_18055 and CSW01_18060 are separated by 3 nucleotidesCSW01_18060 and CSW01_18065 are separated by 109 nucleotides CSW01_18050: CSW01_18050 - hypothetical protein, at 716,005 to 716,190 _18050 CSW01_18055: CSW01_18055 - hypothetical protein, at 716,312 to 717,052 _18055 CSW01_18060: CSW01_18060 - allophanate hydrolase, at 717,056 to 717,766 _18060 CSW01_18065: CSW01_18065 - allophanate hydrolase, at 717,876 to 718,805 _18065 Position (kb) 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.199 kb on + strandat 716.239 kb on + strandat 716.297 kb on + strandat 716.335 kb on - strandat 716.450 kb on + strand, within CSW01_18055at 716.499 kb on - strand, within CSW01_18055at 716.529 kb on + strand, within CSW01_18055at 716.537 kb on - strand, within CSW01_18055at 716.670 kb on - strand, within CSW01_18055at 716.704 kb on + strand, within CSW01_18055at 716.721 kb on + strand, within CSW01_18055at 716.729 kb on - strand, within CSW01_18055at 716.767 kb on - strand, within CSW01_18055at 716.767 kb on - strand, within CSW01_18055at 716.876 kb on + strand, within CSW01_18055at 716.951 kb on - strand, within CSW01_18055at 716.987 kb on - strandat 716.987 kb on - strandat 717.001 kb on + strandat 717.101 kb on - strandat 717.166 kb on + strand, within CSW01_18060at 717.183 kb on + strand, within CSW01_18060at 717.246 kb on + strand, within CSW01_18060at 717.371 kb on - strand, within CSW01_18060at 717.516 kb on + strand, within CSW01_18060at 717.785 kb on - strandat 717.785 kb on - strandat 717.801 kb on - strandat 717.814 kb on + strandat 717.998 kb on - strand, within CSW01_18065at 718.084 kb on - strand, within CSW01_18065at 718.237 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.287 kb on + strand, within CSW01_18065at 718.288 kb on + strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.312 kb on + strand, within CSW01_18065at 718.329 kb on + strand, within CSW01_18065at 718.337 kb on - strand, within CSW01_18065at 718.401 kb on + strand, within CSW01_18065at 718.416 kb on + strand, within CSW01_18065at 718.539 kb on + strand, within CSW01_18065at 718.547 kb on - strand, within CSW01_18065at 718.568 kb on - strand, within CSW01_18065at 718.702 kb on + strand, within CSW01_18065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
remove
716,199 + -2.3
716,239 + -1.9
716,297 + -2.9
716,335 - +0.8
716,450 + CSW01_18055 0.19 -0.5
716,499 - CSW01_18055 0.25 -0.9
716,529 + CSW01_18055 0.29 -1.7
716,537 - CSW01_18055 0.30 +0.0
716,670 - CSW01_18055 0.48 -2.4
716,704 + CSW01_18055 0.53 -1.8
716,721 + CSW01_18055 0.55 +0.0
716,729 - CSW01_18055 0.56 +0.3
716,767 - CSW01_18055 0.61 +0.5
716,767 - CSW01_18055 0.61 +0.2
716,876 + CSW01_18055 0.76 +0.6
716,951 - CSW01_18055 0.86 -1.2
716,987 - -0.2
716,987 - -2.6
717,001 + +0.7
717,101 - +0.4
717,166 + CSW01_18060 0.15 +1.6
717,183 + CSW01_18060 0.18 -1.2
717,246 + CSW01_18060 0.27 +1.1
717,371 - CSW01_18060 0.44 -0.1
717,516 + CSW01_18060 0.65 +0.5
717,785 - -1.0
717,785 - +1.0
717,801 - +0.1
717,814 + -0.3
717,998 - CSW01_18065 0.13 +0.6
718,084 - CSW01_18065 0.22 -0.1
718,237 + CSW01_18065 0.39 -0.6
718,249 + CSW01_18065 0.40 -0.9
718,249 + CSW01_18065 0.40 -1.3
718,249 + CSW01_18065 0.40 -1.3
718,249 + CSW01_18065 0.40 +0.4
718,249 + CSW01_18065 0.40 -0.7
718,249 + CSW01_18065 0.40 -1.3
718,287 + CSW01_18065 0.44 -1.2
718,288 + CSW01_18065 0.44 +0.9
718,295 - CSW01_18065 0.45 +0.6
718,295 - CSW01_18065 0.45 -0.3
718,295 - CSW01_18065 0.45 +0.1
718,312 + CSW01_18065 0.47 +2.2
718,329 + CSW01_18065 0.49 -0.0
718,337 - CSW01_18065 0.50 -0.7
718,401 + CSW01_18065 0.56 -2.8
718,416 + CSW01_18065 0.58 +0.8
718,539 + CSW01_18065 0.71 -0.1
718,547 - CSW01_18065 0.72 -1.0
718,568 - CSW01_18065 0.74 -1.9
718,702 + CSW01_18065 0.89 +1.9

Or see this region's nucleotide sequence