Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17650 and CSW01_17655 are separated by 670 nucleotides CSW01_17655 and CSW01_17660 are separated by 3 nucleotides
CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243
_17650
CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816
_17655
CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658
_17660
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 627.923 kb on - strand, within CSW01_17650 at 628.066 kb on + strand, within CSW01_17650 at 628.074 kb on - strand, within CSW01_17650 at 628.074 kb on - strand, within CSW01_17650 at 628.122 kb on - strand, within CSW01_17650 at 628.125 kb on + strand, within CSW01_17650 at 628.178 kb on - strand at 628.198 kb on + strand at 628.249 kb on + strand at 628.250 kb on - strand at 628.282 kb on - strand at 628.290 kb on + strand at 628.290 kb on + strand at 628.290 kb on + strand at 628.292 kb on + strand at 628.298 kb on - strand at 628.298 kb on - strand at 628.310 kb on - strand at 628.315 kb on - strand at 628.325 kb on + strand at 628.330 kb on - strand at 628.330 kb on - strand at 628.670 kb on + strand at 628.689 kb on + strand at 628.716 kb on + strand at 628.724 kb on - strand at 628.724 kb on - strand at 628.893 kb on + strand at 628.947 kb on - strand at 628.950 kb on - strand at 628.955 kb on - strand at 628.956 kb on + strand at 628.975 kb on + strand at 628.979 kb on + strand at 628.980 kb on + strand at 628.982 kb on - strand at 628.984 kb on + strand at 629.062 kb on - strand, within CSW01_17655 at 629.122 kb on + strand, within CSW01_17655 at 629.195 kb on - strand, within CSW01_17655 at 629.419 kb on + strand, within CSW01_17655 at 629.502 kb on + strand, within CSW01_17655 at 629.520 kb on + strand, within CSW01_17655 at 629.528 kb on - strand, within CSW01_17655 at 629.528 kb on - strand, within CSW01_17655 at 629.551 kb on + strand, within CSW01_17655 at 629.811 kb on + strand at 629.904 kb on + strand at 629.937 kb on + strand at 629.945 kb on - strand at 630.027 kb on + strand, within CSW01_17660 at 630.035 kb on - strand, within CSW01_17660 at 630.035 kb on - strand, within CSW01_17660 at 630.065 kb on - strand, within CSW01_17660 at 630.097 kb on - strand, within CSW01_17660 at 630.143 kb on - strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.159 kb on + strand, within CSW01_17660 at 630.167 kb on - strand, within CSW01_17660 at 630.167 kb on - strand, within CSW01_17660 at 630.167 kb on - strand, within CSW01_17660 at 630.172 kb on - strand, within CSW01_17660 at 630.356 kb on + strand, within CSW01_17660 at 630.502 kb on - strand, within CSW01_17660 at 630.502 kb on - strand, within CSW01_17660 at 630.634 kb on + strand, within CSW01_17660 at 630.634 kb on + strand, within CSW01_17660 at 630.648 kb on + strand, within CSW01_17660 at 630.697 kb on - strand, within CSW01_17660
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 627,923 - CSW01_17650 0.57 +2.5 628,066 + CSW01_17650 0.76 -0.5 628,074 - CSW01_17650 0.77 +0.5 628,074 - CSW01_17650 0.77 -0.7 628,122 - CSW01_17650 0.84 -0.7 628,125 + CSW01_17650 0.84 -1.2 628,178 - +1.5 628,198 + -2.1 628,249 + +0.9 628,250 - -4.7 628,282 - +0.0 628,290 + +1.2 628,290 + -1.4 628,290 + -0.0 628,292 + -0.2 628,298 - +1.0 628,298 - -2.2 628,310 - +0.4 628,315 - +2.0 628,325 + -2.1 628,330 - -0.2 628,330 - +1.2 628,670 + -0.8 628,689 + -0.7 628,716 + +0.9 628,724 - +1.2 628,724 - +0.1 628,893 + +0.4 628,947 - +0.1 628,950 - -0.6 628,955 - +0.3 628,956 + +3.7 628,975 + -0.5 628,979 + -2.7 628,980 + +0.2 628,982 - -1.9 628,984 + -0.6 629,062 - CSW01_17655 0.16 -0.9 629,122 + CSW01_17655 0.23 -2.7 629,195 - CSW01_17655 0.31 -1.1 629,419 + CSW01_17655 0.56 +0.8 629,502 + CSW01_17655 0.65 -1.6 629,520 + CSW01_17655 0.67 +0.2 629,528 - CSW01_17655 0.68 -1.1 629,528 - CSW01_17655 0.68 -0.3 629,551 + CSW01_17655 0.71 -1.7 629,811 + +0.1 629,904 + +1.7 629,937 + +1.6 629,945 - +2.3 630,027 + CSW01_17660 0.11 -1.6 630,035 - CSW01_17660 0.12 -0.2 630,035 - CSW01_17660 0.12 +0.8 630,065 - CSW01_17660 0.13 -2.2 630,097 - CSW01_17660 0.15 -1.1 630,143 - CSW01_17660 0.18 +0.9 630,159 + CSW01_17660 0.18 +0.8 630,159 + CSW01_17660 0.18 -1.3 630,159 + CSW01_17660 0.18 +1.3 630,159 + CSW01_17660 0.18 -1.2 630,159 + CSW01_17660 0.18 +0.4 630,159 + CSW01_17660 0.18 +1.0 630,167 - CSW01_17660 0.19 +1.0 630,167 - CSW01_17660 0.19 -0.2 630,167 - CSW01_17660 0.19 -0.9 630,172 - CSW01_17660 0.19 -0.5 630,356 + CSW01_17660 0.29 +0.3 630,502 - CSW01_17660 0.37 -2.1 630,502 - CSW01_17660 0.37 +0.5 630,634 + CSW01_17660 0.44 -0.9 630,634 + CSW01_17660 0.44 -0.3 630,648 + CSW01_17660 0.45 -0.1 630,697 - CSW01_17660 0.48 -0.4
Or see this region's nucleotide sequence