Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17585 and CSW01_17590 are separated by 17 nucleotides CSW01_17590 and CSW01_17595 are separated by 11 nucleotides CSW01_17595 and CSW01_17600 are separated by 43 nucleotides CSW01_17600 and CSW01_17605 are separated by 158 nucleotides CSW01_17605 and CSW01_17610 are separated by 2 nucleotides
CSW01_17585: CSW01_17585 - periplasmic nitrate reductase electron transfer subunit, at 613,293 to 613,748
_17585
CSW01_17590: CSW01_17590 - cytochrome C, at 613,766 to 614,341
_17590
CSW01_17595: CSW01_17595 - TIGR02808 family protein, at 614,353 to 614,481
_17595
CSW01_17600: CSW01_17600 - HDIG domain-containing protein, at 614,525 to 615,820
_17600
CSW01_17605: CSW01_17605 - DNA-binding response regulator, at 615,979 to 616,605
_17605
CSW01_17610: CSW01_17610 - signal transduction histidine-protein kinase/phosphatase UhpB, at 616,608 to 618,191
_17610
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.611 kb on - strand, within CSW01_17585 at 613.944 kb on + strand, within CSW01_17590 at 613.974 kb on + strand, within CSW01_17590 at 614.045 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.208 kb on + strand, within CSW01_17590 at 614.216 kb on - strand, within CSW01_17590 at 614.223 kb on + strand, within CSW01_17590 at 614.226 kb on - strand, within CSW01_17590 at 614.324 kb on + strand at 614.382 kb on + strand, within CSW01_17595 at 614.553 kb on + strand at 614.553 kb on + strand at 614.553 kb on + strand at 614.561 kb on - strand at 614.561 kb on - strand at 614.561 kb on - strand at 614.696 kb on - strand, within CSW01_17600 at 614.881 kb on - strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.929 kb on + strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.937 kb on - strand, within CSW01_17600 at 614.945 kb on - strand, within CSW01_17600 at 615.004 kb on + strand, within CSW01_17600 at 615.031 kb on - strand, within CSW01_17600 at 615.135 kb on - strand, within CSW01_17600 at 615.214 kb on + strand, within CSW01_17600 at 615.224 kb on + strand, within CSW01_17600 at 615.248 kb on - strand, within CSW01_17600 at 615.360 kb on - strand, within CSW01_17600 at 615.365 kb on - strand, within CSW01_17600 at 615.512 kb on + strand, within CSW01_17600 at 615.586 kb on - strand, within CSW01_17600 at 615.602 kb on + strand, within CSW01_17600 at 615.602 kb on + strand, within CSW01_17600 at 615.611 kb on - strand, within CSW01_17600 at 615.666 kb on + strand, within CSW01_17600 at 615.714 kb on - strand at 615.800 kb on + strand at 615.808 kb on - strand at 615.808 kb on - strand at 615.853 kb on + strand at 615.861 kb on - strand at 615.861 kb on - strand at 615.875 kb on + strand at 615.893 kb on + strand at 615.997 kb on + strand at 616.028 kb on + strand at 616.038 kb on + strand at 616.038 kb on + strand at 616.061 kb on - strand, within CSW01_17605 at 616.095 kb on + strand, within CSW01_17605 at 616.105 kb on - strand, within CSW01_17605 at 616.268 kb on - strand, within CSW01_17605 at 616.424 kb on + strand, within CSW01_17605 at 616.483 kb on + strand, within CSW01_17605 at 616.535 kb on + strand, within CSW01_17605 at 616.535 kb on + strand, within CSW01_17605 at 616.568 kb on + strand at 616.573 kb on + strand at 616.643 kb on + strand at 616.651 kb on + strand at 616.654 kb on - strand at 616.659 kb on - strand at 616.731 kb on + strand at 616.731 kb on + strand at 616.731 kb on + strand at 616.739 kb on - strand at 616.809 kb on + strand, within CSW01_17610
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 613,611 - CSW01_17585 0.70 -2.0 613,944 + CSW01_17590 0.31 -0.2 613,974 + CSW01_17590 0.36 +0.0 614,045 + CSW01_17590 0.48 -1.5 614,208 + CSW01_17590 0.77 +1.2 614,208 + CSW01_17590 0.77 -0.0 614,208 + CSW01_17590 0.77 -1.7 614,216 - CSW01_17590 0.78 -0.3 614,223 + CSW01_17590 0.79 +0.8 614,226 - CSW01_17590 0.80 +1.9 614,324 + -0.7 614,382 + CSW01_17595 0.22 +0.0 614,553 + -1.5 614,553 + -0.2 614,553 + +0.3 614,561 - +0.2 614,561 - +1.0 614,561 - +0.8 614,696 - CSW01_17600 0.13 +0.8 614,881 - CSW01_17600 0.27 -0.5 614,929 + CSW01_17600 0.31 -1.2 614,929 + CSW01_17600 0.31 +0.3 614,929 + CSW01_17600 0.31 -1.3 614,937 - CSW01_17600 0.32 +1.1 614,937 - CSW01_17600 0.32 -2.2 614,937 - CSW01_17600 0.32 -1.7 614,937 - CSW01_17600 0.32 +1.4 614,945 - CSW01_17600 0.32 -0.1 615,004 + CSW01_17600 0.37 -0.2 615,031 - CSW01_17600 0.39 -1.4 615,135 - CSW01_17600 0.47 +1.1 615,214 + CSW01_17600 0.53 +2.2 615,224 + CSW01_17600 0.54 -0.1 615,248 - CSW01_17600 0.56 -1.4 615,360 - CSW01_17600 0.64 -1.3 615,365 - CSW01_17600 0.65 -0.2 615,512 + CSW01_17600 0.76 -1.6 615,586 - CSW01_17600 0.82 +0.7 615,602 + CSW01_17600 0.83 -1.2 615,602 + CSW01_17600 0.83 -0.6 615,611 - CSW01_17600 0.84 +0.4 615,666 + CSW01_17600 0.88 -0.9 615,714 - -0.2 615,800 + -0.5 615,808 - -1.9 615,808 - -3.0 615,853 + -1.0 615,861 - -0.3 615,861 - +0.4 615,875 + +0.3 615,893 + +0.8 615,997 + -0.6 616,028 + +0.7 616,038 + -2.2 616,038 + +0.3 616,061 - CSW01_17605 0.13 -0.2 616,095 + CSW01_17605 0.19 +0.8 616,105 - CSW01_17605 0.20 +0.2 616,268 - CSW01_17605 0.46 +1.7 616,424 + CSW01_17605 0.71 +1.3 616,483 + CSW01_17605 0.80 +0.6 616,535 + CSW01_17605 0.89 -0.2 616,535 + CSW01_17605 0.89 +0.0 616,568 + +0.5 616,573 + +0.6 616,643 + -0.5 616,651 + -0.2 616,654 - -0.6 616,659 - -2.0 616,731 + -1.4 616,731 + -2.7 616,731 + +1.2 616,739 - +0.3 616,809 + CSW01_17610 0.13 +0.9
Or see this region's nucleotide sequence