Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17315

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17305 and CSW01_17310 are separated by 21 nucleotidesCSW01_17310 and CSW01_17315 are separated by 84 nucleotidesCSW01_17315 and CSW01_17320 overlap by 2 nucleotidesCSW01_17320 and CSW01_17325 are separated by 483 nucleotides CSW01_17305: CSW01_17305 - glyoxalase, at 552,404 to 552,772 _17305 CSW01_17310: CSW01_17310 - 3-mercaptopyruvate sulfurtransferase, at 552,794 to 553,624 _17310 CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704 _17315 CSW01_17320: CSW01_17320 - hypothetical protein, at 554,703 to 554,813 _17320 CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247 _17325 Position (kb) 553 554 555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 552.993 kb on + strand, within CSW01_17310at 552.993 kb on + strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.006 kb on + strand, within CSW01_17310at 553.014 kb on - strand, within CSW01_17310at 553.138 kb on - strand, within CSW01_17310at 553.189 kb on + strand, within CSW01_17310at 553.252 kb on - strand, within CSW01_17310at 553.307 kb on - strand, within CSW01_17310at 553.367 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.458 kb on + strand, within CSW01_17310at 553.458 kb on + strand, within CSW01_17310at 553.466 kb on - strand, within CSW01_17310at 553.468 kb on + strand, within CSW01_17310at 553.473 kb on + strand, within CSW01_17310at 553.476 kb on - strand, within CSW01_17310at 553.503 kb on + strand, within CSW01_17310at 553.503 kb on + strand, within CSW01_17310at 553.511 kb on - strand, within CSW01_17310at 553.518 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.529 kb on - strand, within CSW01_17310at 553.538 kb on + strand, within CSW01_17310at 553.548 kb on - strandat 553.589 kb on + strandat 553.598 kb on - strandat 553.749 kb on - strandat 553.822 kb on - strand, within CSW01_17315at 553.838 kb on + strand, within CSW01_17315at 554.106 kb on - strand, within CSW01_17315at 554.108 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.300 kb on + strand, within CSW01_17315at 554.340 kb on - strand, within CSW01_17315at 554.352 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.481 kb on + strand, within CSW01_17315at 554.489 kb on - strand, within CSW01_17315at 554.612 kb on + strandat 554.620 kb on + strandat 554.665 kb on + strandat 554.727 kb on + strand, within CSW01_17320at 554.744 kb on + strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.752 kb on - strand, within CSW01_17320at 554.879 kb on - strandat 554.879 kb on - strandat 554.882 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.173 kb on + strandat 555.250 kb on + strandat 555.395 kb on + strand, within CSW01_17325at 555.395 kb on + strand, within CSW01_17325at 555.413 kb on + strand, within CSW01_17325at 555.440 kb on - strand, within CSW01_17325at 555.444 kb on + strand, within CSW01_17325at 555.459 kb on + strand, within CSW01_17325at 555.504 kb on + strand, within CSW01_17325at 555.512 kb on - strand, within CSW01_17325at 555.514 kb on + strand, within CSW01_17325

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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552,993 + CSW01_17310 0.24 +0.7
552,993 + CSW01_17310 0.24 -0.4
553,001 - CSW01_17310 0.25 -0.2
553,001 - CSW01_17310 0.25 +1.0
553,006 + CSW01_17310 0.26 +2.8
553,014 - CSW01_17310 0.26 +0.3
553,138 - CSW01_17310 0.41 -1.1
553,189 + CSW01_17310 0.48 +0.7
553,252 - CSW01_17310 0.55 +1.8
553,307 - CSW01_17310 0.62 -0.5
553,367 + CSW01_17310 0.69 +1.0
553,405 + CSW01_17310 0.74 -1.3
553,405 + CSW01_17310 0.74 -3.0
553,405 + CSW01_17310 0.74 -0.5
553,405 + CSW01_17310 0.74 +0.6
553,458 + CSW01_17310 0.80 +0.0
553,458 + CSW01_17310 0.80 -2.4
553,466 - CSW01_17310 0.81 +0.0
553,468 + CSW01_17310 0.81 -1.8
553,473 + CSW01_17310 0.82 -3.2
553,476 - CSW01_17310 0.82 +1.3
553,503 + CSW01_17310 0.85 +0.4
553,503 + CSW01_17310 0.85 -1.1
553,511 - CSW01_17310 0.86 -2.3
553,518 + CSW01_17310 0.87 -1.2
553,521 + CSW01_17310 0.87 +0.5
553,521 + CSW01_17310 0.87 -0.2
553,521 + CSW01_17310 0.87 -1.9
553,529 - CSW01_17310 0.88 -0.0
553,538 + CSW01_17310 0.90 +1.2
553,548 - -0.9
553,589 + +0.7
553,598 - -1.4
553,749 - -0.4
553,822 - CSW01_17315 0.11 -3.1
553,838 + CSW01_17315 0.13 -1.9
554,106 - CSW01_17315 0.40 +0.5
554,108 + CSW01_17315 0.40 +0.7
554,232 + CSW01_17315 0.53 -3.5
554,232 + CSW01_17315 0.53 -0.6
554,232 + CSW01_17315 0.53 -0.2
554,232 + CSW01_17315 0.53 +0.5
554,232 + CSW01_17315 0.53 -0.7
554,232 + CSW01_17315 0.53 -0.8
554,232 + CSW01_17315 0.53 -0.9
554,232 + CSW01_17315 0.53 +0.4
554,232 + CSW01_17315 0.53 -0.7
554,240 - CSW01_17315 0.53 -0.3
554,240 - CSW01_17315 0.53 -0.6
554,240 - CSW01_17315 0.53 -0.5
554,240 - CSW01_17315 0.53 -0.6
554,240 - CSW01_17315 0.53 -0.3
554,240 - CSW01_17315 0.53 -2.5
554,240 - CSW01_17315 0.53 +0.5
554,240 - CSW01_17315 0.53 -0.9
554,300 + CSW01_17315 0.59 -0.3
554,340 - CSW01_17315 0.63 +1.0
554,352 - CSW01_17315 0.65 +1.2
554,420 - CSW01_17315 0.71 +0.9
554,420 - CSW01_17315 0.71 +1.6
554,481 + CSW01_17315 0.78 -1.0
554,489 - CSW01_17315 0.78 -1.0
554,612 + +0.9
554,620 + -2.8
554,665 + +0.1
554,727 + CSW01_17320 0.22 -0.3
554,744 + CSW01_17320 0.37 -1.9
554,750 - CSW01_17320 0.42 -0.2
554,750 - CSW01_17320 0.42 +0.7
554,752 - CSW01_17320 0.44 -0.9
554,879 - +0.8
554,879 - +1.3
554,882 + -1.7
555,085 + -0.3
555,085 + +0.1
555,085 + -0.6
555,085 + -0.3
555,085 + +0.1
555,085 + +0.2
555,085 + -0.8
555,085 + -1.8
555,085 + +0.1
555,093 - -0.5
555,093 - -2.0
555,093 - -0.3
555,093 - -1.2
555,173 + -2.5
555,250 + -2.4
555,395 + CSW01_17325 0.10 -1.9
555,395 + CSW01_17325 0.10 -1.0
555,413 + CSW01_17325 0.12 -2.4
555,440 - CSW01_17325 0.15 +0.5
555,444 + CSW01_17325 0.15 +0.6
555,459 + CSW01_17325 0.17 -2.7
555,504 + CSW01_17325 0.22 -4.4
555,512 - CSW01_17325 0.23 -3.1
555,514 + CSW01_17325 0.23 -0.4

Or see this region's nucleotide sequence