Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17180

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17175 and CSW01_17180 overlap by 4 nucleotidesCSW01_17180 and CSW01_17185 are separated by 8 nucleotides CSW01_17175: CSW01_17175 - ABC transporter permease, at 524,600 to 525,658 _17175 CSW01_17180: CSW01_17180 - peptide ABC transporter permease, at 525,655 to 526,737 _17180 CSW01_17185: CSW01_17185 - ABC transporter substrate-binding protein, at 526,746 to 528,581 _17185 Position (kb) 525 526 527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.662 kb on - strandat 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.809 kb on + strand, within CSW01_17175at 524.859 kb on + strand, within CSW01_17175at 524.999 kb on - strand, within CSW01_17175at 525.084 kb on + strand, within CSW01_17175at 525.099 kb on - strand, within CSW01_17175at 525.115 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.477 kb on + strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175at 525.686 kb on + strandat 525.686 kb on + strandat 525.694 kb on - strandat 525.720 kb on + strandat 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.928 kb on - strand, within CSW01_17180at 526.418 kb on + strand, within CSW01_17180at 526.433 kb on - strand, within CSW01_17180at 526.617 kb on + strand, within CSW01_17180at 526.627 kb on - strand, within CSW01_17180at 526.629 kb on + strandat 526.647 kb on - strandat 526.705 kb on - strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.730 kb on - strandat 526.787 kb on - strandat 526.996 kb on - strand, within CSW01_17185at 527.098 kb on - strand, within CSW01_17185at 527.181 kb on + strand, within CSW01_17185at 527.247 kb on - strand, within CSW01_17185at 527.249 kb on + strand, within CSW01_17185at 527.249 kb on + strand, within CSW01_17185at 527.257 kb on - strand, within CSW01_17185at 527.272 kb on + strand, within CSW01_17185at 527.280 kb on - strand, within CSW01_17185at 527.280 kb on - strand, within CSW01_17185at 527.328 kb on + strand, within CSW01_17185at 527.431 kb on + strand, within CSW01_17185at 527.431 kb on + strand, within CSW01_17185at 527.466 kb on + strand, within CSW01_17185at 527.568 kb on - strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.698 kb on + strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.706 kb on - strand, within CSW01_17185at 527.715 kb on + strand, within CSW01_17185at 527.718 kb on - strand, within CSW01_17185

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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524,662 - -0.2
524,730 + CSW01_17175 0.12 -0.2
524,730 + CSW01_17175 0.12 +1.4
524,730 + CSW01_17175 0.12 +0.2
524,809 + CSW01_17175 0.20 -0.7
524,859 + CSW01_17175 0.24 -1.4
524,999 - CSW01_17175 0.38 +0.7
525,084 + CSW01_17175 0.46 +0.7
525,099 - CSW01_17175 0.47 +0.1
525,115 + CSW01_17175 0.49 +0.3
525,444 + CSW01_17175 0.80 +0.4
525,444 + CSW01_17175 0.80 +0.3
525,477 + CSW01_17175 0.83 +0.2
525,485 - CSW01_17175 0.84 -0.0
525,485 - CSW01_17175 0.84 +0.7
525,686 + -0.0
525,686 + -2.1
525,694 - +0.4
525,720 + -0.1
525,804 + CSW01_17180 0.14 -2.2
525,804 + CSW01_17180 0.14 -1.3
525,804 + CSW01_17180 0.14 +0.2
525,928 - CSW01_17180 0.25 -0.9
526,418 + CSW01_17180 0.70 +0.4
526,433 - CSW01_17180 0.72 -0.9
526,617 + CSW01_17180 0.89 +1.5
526,627 - CSW01_17180 0.90 +0.6
526,629 + +0.1
526,647 - -1.0
526,705 - +0.9
526,722 + -1.7
526,722 + +0.6
526,722 + +2.1
526,722 + +0.8
526,722 + -0.1
526,722 + -0.5
526,722 + -1.3
526,722 + +0.8
526,722 + +1.7
526,730 - +0.7
526,730 - +0.6
526,730 - -3.2
526,730 - +1.0
526,787 - -3.1
526,996 - CSW01_17185 0.14 -0.7
527,098 - CSW01_17185 0.19 -2.4
527,181 + CSW01_17185 0.24 -0.2
527,247 - CSW01_17185 0.27 -0.4
527,249 + CSW01_17185 0.27 +0.8
527,249 + CSW01_17185 0.27 -0.6
527,257 - CSW01_17185 0.28 +0.6
527,272 + CSW01_17185 0.29 -2.6
527,280 - CSW01_17185 0.29 +0.1
527,280 - CSW01_17185 0.29 -1.1
527,328 + CSW01_17185 0.32 -0.1
527,431 + CSW01_17185 0.37 +0.7
527,431 + CSW01_17185 0.37 -1.2
527,466 + CSW01_17185 0.39 -3.3
527,568 - CSW01_17185 0.45 -1.2
527,698 + CSW01_17185 0.52 +0.2
527,698 + CSW01_17185 0.52 +0.7
527,698 + CSW01_17185 0.52 +0.1
527,698 + CSW01_17185 0.52 -1.6
527,706 - CSW01_17185 0.52 +1.0
527,706 - CSW01_17185 0.52 +1.2
527,706 - CSW01_17185 0.52 +1.5
527,706 - CSW01_17185 0.52 +1.7
527,706 - CSW01_17185 0.52 -1.6
527,706 - CSW01_17185 0.52 +0.4
527,706 - CSW01_17185 0.52 -1.1
527,715 + CSW01_17185 0.53 +2.0
527,718 - CSW01_17185 0.53 +0.6

Or see this region's nucleotide sequence