Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17105 and CSW01_17110 are separated by 40 nucleotides CSW01_17110 and CSW01_17115 are separated by 100 nucleotides
CSW01_17105: CSW01_17105 - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor, at 513,125 to 515,221
_17105
CSW01_17110: CSW01_17110 - hypothetical protein, at 515,262 to 515,444
_17110
CSW01_17115: CSW01_17115 - SgrR family transcriptional regulator, at 515,545 to 517,242
_17115
Position (kb) 515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.319 kb on + strand, within CSW01_17105 at 514.337 kb on - strand, within CSW01_17105 at 514.351 kb on - strand, within CSW01_17105 at 514.389 kb on + strand, within CSW01_17105 at 514.389 kb on + strand, within CSW01_17105 at 514.397 kb on - strand, within CSW01_17105 at 514.397 kb on - strand, within CSW01_17105 at 514.397 kb on - strand, within CSW01_17105 at 514.397 kb on - strand, within CSW01_17105 at 514.397 kb on - strand, within CSW01_17105 at 514.442 kb on + strand, within CSW01_17105 at 514.563 kb on - strand, within CSW01_17105 at 514.591 kb on + strand, within CSW01_17105 at 514.604 kb on + strand, within CSW01_17105 at 514.711 kb on + strand, within CSW01_17105 at 514.726 kb on + strand, within CSW01_17105 at 514.734 kb on - strand, within CSW01_17105 at 514.740 kb on + strand, within CSW01_17105 at 514.750 kb on - strand, within CSW01_17105 at 514.826 kb on - strand, within CSW01_17105 at 514.829 kb on + strand, within CSW01_17105 at 514.829 kb on + strand, within CSW01_17105 at 514.837 kb on - strand, within CSW01_17105 at 514.892 kb on + strand, within CSW01_17105 at 514.920 kb on + strand, within CSW01_17105 at 514.975 kb on + strand, within CSW01_17105 at 514.975 kb on + strand, within CSW01_17105 at 514.985 kb on - strand, within CSW01_17105 at 515.000 kb on + strand, within CSW01_17105 at 515.005 kb on + strand, within CSW01_17105 at 515.005 kb on + strand, within CSW01_17105 at 515.005 kb on + strand, within CSW01_17105 at 515.025 kb on - strand at 515.044 kb on - strand at 515.057 kb on + strand at 515.058 kb on - strand at 515.065 kb on - strand at 515.070 kb on - strand at 515.078 kb on + strand at 515.091 kb on + strand at 515.099 kb on - strand at 515.099 kb on - strand at 515.182 kb on - strand at 515.435 kb on + strand at 515.456 kb on + strand at 515.456 kb on + strand at 515.456 kb on + strand at 515.461 kb on + strand at 515.461 kb on + strand at 515.464 kb on - strand at 515.464 kb on - strand at 515.464 kb on - strand at 515.469 kb on - strand at 515.536 kb on + strand at 515.558 kb on - strand at 515.578 kb on - strand at 515.596 kb on + strand at 515.604 kb on - strand at 515.632 kb on + strand at 515.645 kb on - strand at 515.645 kb on - strand at 515.649 kb on + strand at 515.725 kb on - strand, within CSW01_17115 at 515.727 kb on + strand, within CSW01_17115 at 516.071 kb on - strand, within CSW01_17115 at 516.077 kb on + strand, within CSW01_17115 at 516.153 kb on + strand, within CSW01_17115 at 516.369 kb on + strand, within CSW01_17115
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 514,319 + CSW01_17105 0.57 +1.3 514,337 - CSW01_17105 0.58 -2.8 514,351 - CSW01_17105 0.58 +0.3 514,389 + CSW01_17105 0.60 -0.2 514,389 + CSW01_17105 0.60 +0.9 514,397 - CSW01_17105 0.61 +0.2 514,397 - CSW01_17105 0.61 -0.3 514,397 - CSW01_17105 0.61 -0.1 514,397 - CSW01_17105 0.61 +0.6 514,397 - CSW01_17105 0.61 +0.5 514,442 + CSW01_17105 0.63 +1.0 514,563 - CSW01_17105 0.69 +0.7 514,591 + CSW01_17105 0.70 -2.2 514,604 + CSW01_17105 0.71 +1.2 514,711 + CSW01_17105 0.76 +0.6 514,726 + CSW01_17105 0.76 -2.9 514,734 - CSW01_17105 0.77 -1.1 514,740 + CSW01_17105 0.77 +0.1 514,750 - CSW01_17105 0.77 -0.2 514,826 - CSW01_17105 0.81 -1.1 514,829 + CSW01_17105 0.81 -0.5 514,829 + CSW01_17105 0.81 +0.8 514,837 - CSW01_17105 0.82 +0.4 514,892 + CSW01_17105 0.84 +0.7 514,920 + CSW01_17105 0.86 -0.0 514,975 + CSW01_17105 0.88 +0.1 514,975 + CSW01_17105 0.88 +0.0 514,985 - CSW01_17105 0.89 -1.2 515,000 + CSW01_17105 0.89 -1.8 515,005 + CSW01_17105 0.90 -2.1 515,005 + CSW01_17105 0.90 -1.6 515,005 + CSW01_17105 0.90 +2.2 515,025 - +0.4 515,044 - -1.2 515,057 + -1.3 515,058 - -1.2 515,065 - -1.6 515,070 - +0.3 515,078 + +2.7 515,091 + -1.1 515,099 - +0.2 515,099 - -0.3 515,182 - +1.2 515,435 + -2.2 515,456 + -0.8 515,456 + +0.2 515,456 + -2.6 515,461 + -0.8 515,461 + -0.7 515,464 - +0.6 515,464 - -0.6 515,464 - -2.3 515,469 - +1.4 515,536 + +0.4 515,558 - +0.9 515,578 - +0.3 515,596 + -0.7 515,604 - -2.1 515,632 + -0.4 515,645 - +0.5 515,645 - -0.9 515,649 + -1.0 515,725 - CSW01_17115 0.11 -1.6 515,727 + CSW01_17115 0.11 -1.0 516,071 - CSW01_17115 0.31 +0.8 516,077 + CSW01_17115 0.31 +1.9 516,153 + CSW01_17115 0.36 +1.4 516,369 + CSW01_17115 0.49 -2.2
Or see this region's nucleotide sequence