Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16955

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16950 and CSW01_16955 are separated by 229 nucleotidesCSW01_16955 and CSW01_16960 are separated by 559 nucleotides CSW01_16950: CSW01_16950 - ATP-dependent endonuclease, at 478,265 to 479,929 _16950 CSW01_16955: CSW01_16955 - bifunctional metallophosphatase/5'-nucleotidase, at 480,159 to 481,901 _16955 CSW01_16960: CSW01_16960 - DUF475 domain-containing protein, at 482,461 to 483,417 _16960 Position (kb) 480 481 482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 479.628 kb on + strand, within CSW01_16950at 479.628 kb on + strand, within CSW01_16950at 479.628 kb on + strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.728 kb on + strand, within CSW01_16950at 479.745 kb on - strand, within CSW01_16950at 479.838 kb on - strandat 479.838 kb on - strandat 479.920 kb on - strandat 479.931 kb on - strandat 479.998 kb on - strandat 480.121 kb on - strandat 480.130 kb on + strandat 480.139 kb on - strandat 480.186 kb on + strandat 480.194 kb on - strandat 480.196 kb on + strandat 480.282 kb on + strandat 480.300 kb on - strandat 480.340 kb on + strand, within CSW01_16955at 480.389 kb on - strand, within CSW01_16955at 480.419 kb on + strand, within CSW01_16955at 480.419 kb on + strand, within CSW01_16955at 480.427 kb on - strand, within CSW01_16955at 480.427 kb on - strand, within CSW01_16955at 480.453 kb on - strand, within CSW01_16955at 480.610 kb on + strand, within CSW01_16955at 480.618 kb on - strand, within CSW01_16955at 480.618 kb on - strand, within CSW01_16955at 480.625 kb on + strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.739 kb on + strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.845 kb on - strand, within CSW01_16955at 480.859 kb on - strand, within CSW01_16955at 480.887 kb on + strand, within CSW01_16955at 480.897 kb on + strand, within CSW01_16955at 480.897 kb on + strand, within CSW01_16955at 480.905 kb on - strand, within CSW01_16955at 480.905 kb on - strand, within CSW01_16955at 480.985 kb on - strand, within CSW01_16955at 481.026 kb on - strand, within CSW01_16955at 481.125 kb on + strand, within CSW01_16955at 481.127 kb on + strand, within CSW01_16955at 481.156 kb on + strand, within CSW01_16955at 481.164 kb on + strand, within CSW01_16955at 481.209 kb on + strand, within CSW01_16955at 481.247 kb on - strand, within CSW01_16955at 481.381 kb on + strand, within CSW01_16955at 481.403 kb on + strand, within CSW01_16955at 481.509 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.562 kb on + strand, within CSW01_16955at 481.564 kb on + strand, within CSW01_16955at 481.570 kb on - strand, within CSW01_16955at 481.570 kb on - strand, within CSW01_16955at 481.570 kb on - strand, within CSW01_16955at 481.570 kb on - strand, within CSW01_16955at 481.606 kb on + strand, within CSW01_16955at 481.614 kb on - strand, within CSW01_16955at 481.640 kb on + strand, within CSW01_16955at 481.640 kb on + strand, within CSW01_16955at 481.654 kb on + strand, within CSW01_16955at 481.710 kb on + strand, within CSW01_16955at 481.710 kb on + strand, within CSW01_16955at 481.710 kb on + strand, within CSW01_16955at 481.718 kb on - strand, within CSW01_16955at 481.767 kb on - strandat 481.859 kb on - strandat 481.861 kb on + strandat 481.869 kb on - strandat 481.911 kb on + strandat 481.990 kb on - strandat 482.097 kb on - strandat 482.106 kb on + strandat 482.123 kb on + strandat 482.280 kb on + strandat 482.343 kb on + strandat 482.420 kb on - strandat 482.420 kb on - strandat 482.641 kb on + strand, within CSW01_16960at 482.641 kb on + strand, within CSW01_16960at 482.641 kb on + strand, within CSW01_16960at 482.641 kb on + strand, within CSW01_16960at 482.769 kb on - strand, within CSW01_16960at 482.814 kb on + strand, within CSW01_16960at 482.822 kb on - strand, within CSW01_16960

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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479,628 + CSW01_16950 0.82 -0.2
479,628 + CSW01_16950 0.82 -1.3
479,628 + CSW01_16950 0.82 +0.8
479,636 - CSW01_16950 0.82 -0.9
479,636 - CSW01_16950 0.82 -1.3
479,636 - CSW01_16950 0.82 +0.7
479,728 + CSW01_16950 0.88 +0.3
479,745 - CSW01_16950 0.89 +1.7
479,838 - -0.6
479,838 - -1.0
479,920 - +0.3
479,931 - +1.5
479,998 - -1.8
480,121 - -0.7
480,130 + +0.9
480,139 - +0.4
480,186 + +1.2
480,194 - -1.0
480,196 + -0.5
480,282 + -1.9
480,300 - +2.5
480,340 + CSW01_16955 0.10 +1.2
480,389 - CSW01_16955 0.13 +0.9
480,419 + CSW01_16955 0.15 -1.5
480,419 + CSW01_16955 0.15 +0.4
480,427 - CSW01_16955 0.15 -2.3
480,427 - CSW01_16955 0.15 -1.3
480,453 - CSW01_16955 0.17 +0.8
480,610 + CSW01_16955 0.26 +0.7
480,618 - CSW01_16955 0.26 +1.0
480,618 - CSW01_16955 0.26 +2.1
480,625 + CSW01_16955 0.27 -2.4
480,644 - CSW01_16955 0.28 +0.3
480,644 - CSW01_16955 0.28 -0.8
480,644 - CSW01_16955 0.28 +0.9
480,644 - CSW01_16955 0.28 +0.4
480,739 + CSW01_16955 0.33 +0.6
480,747 - CSW01_16955 0.34 -0.8
480,747 - CSW01_16955 0.34 +2.0
480,747 - CSW01_16955 0.34 +0.2
480,845 - CSW01_16955 0.39 +0.5
480,859 - CSW01_16955 0.40 -0.1
480,887 + CSW01_16955 0.42 -2.2
480,897 + CSW01_16955 0.42 +1.6
480,897 + CSW01_16955 0.42 -2.1
480,905 - CSW01_16955 0.43 +0.5
480,905 - CSW01_16955 0.43 +1.0
480,985 - CSW01_16955 0.47 -2.2
481,026 - CSW01_16955 0.50 +0.5
481,125 + CSW01_16955 0.55 -0.2
481,127 + CSW01_16955 0.56 -2.1
481,156 + CSW01_16955 0.57 +1.7
481,164 + CSW01_16955 0.58 +1.0
481,209 + CSW01_16955 0.60 -1.5
481,247 - CSW01_16955 0.62 -0.4
481,381 + CSW01_16955 0.70 -0.9
481,403 + CSW01_16955 0.71 -0.7
481,509 + CSW01_16955 0.77 +1.0
481,562 + CSW01_16955 0.80 -0.8
481,562 + CSW01_16955 0.80 +0.7
481,562 + CSW01_16955 0.80 +0.8
481,562 + CSW01_16955 0.80 +1.4
481,562 + CSW01_16955 0.80 -2.3
481,562 + CSW01_16955 0.80 -2.1
481,562 + CSW01_16955 0.80 -0.9
481,564 + CSW01_16955 0.81 +0.5
481,570 - CSW01_16955 0.81 +1.0
481,570 - CSW01_16955 0.81 -2.7
481,570 - CSW01_16955 0.81 -2.3
481,570 - CSW01_16955 0.81 +0.6
481,606 + CSW01_16955 0.83 +0.7
481,614 - CSW01_16955 0.83 +0.5
481,640 + CSW01_16955 0.85 +0.4
481,640 + CSW01_16955 0.85 -1.6
481,654 + CSW01_16955 0.86 -1.5
481,710 + CSW01_16955 0.89 +1.0
481,710 + CSW01_16955 0.89 -1.1
481,710 + CSW01_16955 0.89 +0.3
481,718 - CSW01_16955 0.89 +1.4
481,767 - -2.1
481,859 - +0.8
481,861 + +0.2
481,869 - -2.1
481,911 + +0.9
481,990 - +1.2
482,097 - +1.0
482,106 + -0.1
482,123 + +0.0
482,280 + -0.7
482,343 + +0.6
482,420 - -0.7
482,420 - +0.3
482,641 + CSW01_16960 0.19 +1.1
482,641 + CSW01_16960 0.19 -1.6
482,641 + CSW01_16960 0.19 -1.1
482,641 + CSW01_16960 0.19 -0.2
482,769 - CSW01_16960 0.32 -1.3
482,814 + CSW01_16960 0.37 -2.8
482,822 - CSW01_16960 0.38 -0.5

Or see this region's nucleotide sequence