Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16915 and CSW01_16920 are separated by 326 nucleotides CSW01_16920 and CSW01_16925 are separated by 386 nucleotides CSW01_16925 and CSW01_16930 overlap by 4 nucleotides
CSW01_16915: CSW01_16915 - EAL domain-containing protein, at 471,352 to 472,218
_16915
CSW01_16920: CSW01_16920 - hypothetical protein, at 472,545 to 473,180
_16920
CSW01_16925: CSW01_16925 - cytochrome b, at 473,567 to 474,112
_16925
CSW01_16930: CSW01_16930 - YceI family protein, at 474,109 to 474,678
_16930
Position (kb) 472
473
474 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 471.617 kb on - strand, within CSW01_16915 at 471.727 kb on + strand, within CSW01_16915 at 471.727 kb on + strand, within CSW01_16915 at 471.783 kb on + strand, within CSW01_16915 at 471.788 kb on + strand, within CSW01_16915 at 471.826 kb on + strand, within CSW01_16915 at 471.870 kb on + strand, within CSW01_16915 at 471.920 kb on - strand, within CSW01_16915 at 471.945 kb on - strand, within CSW01_16915 at 472.021 kb on - strand, within CSW01_16915 at 472.146 kb on - strand at 472.295 kb on + strand at 472.302 kb on + strand at 472.432 kb on + strand at 472.432 kb on + strand at 472.519 kb on + strand at 472.527 kb on - strand at 472.564 kb on + strand at 472.707 kb on + strand, within CSW01_16920 at 472.862 kb on + strand, within CSW01_16920 at 472.870 kb on - strand, within CSW01_16920 at 472.954 kb on + strand, within CSW01_16920 at 473.066 kb on - strand, within CSW01_16920 at 473.122 kb on + strand at 473.228 kb on - strand at 473.288 kb on - strand at 473.296 kb on + strand at 473.296 kb on + strand at 473.296 kb on + strand at 473.301 kb on + strand at 473.304 kb on - strand at 473.304 kb on - strand at 473.304 kb on - strand at 473.373 kb on + strand at 473.373 kb on + strand at 473.381 kb on - strand at 473.381 kb on - strand at 473.526 kb on + strand at 473.548 kb on + strand at 473.627 kb on + strand, within CSW01_16925 at 473.677 kb on + strand, within CSW01_16925 at 473.695 kb on + strand, within CSW01_16925 at 473.695 kb on + strand, within CSW01_16925 at 473.705 kb on + strand, within CSW01_16925 at 473.708 kb on - strand, within CSW01_16925 at 473.716 kb on - strand, within CSW01_16925 at 473.730 kb on - strand, within CSW01_16925 at 473.781 kb on + strand, within CSW01_16925 at 473.887 kb on - strand, within CSW01_16925 at 473.910 kb on + strand, within CSW01_16925 at 473.911 kb on - strand, within CSW01_16925 at 473.918 kb on - strand, within CSW01_16925 at 473.918 kb on - strand, within CSW01_16925 at 473.918 kb on - strand, within CSW01_16925 at 473.936 kb on - strand, within CSW01_16925 at 474.002 kb on + strand, within CSW01_16925 at 474.036 kb on - strand, within CSW01_16925 at 474.047 kb on + strand, within CSW01_16925 at 474.047 kb on + strand, within CSW01_16925
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 471,617 - CSW01_16915 0.31 -1.7 471,727 + CSW01_16915 0.43 -2.4 471,727 + CSW01_16915 0.43 +0.6 471,783 + CSW01_16915 0.50 -2.1 471,788 + CSW01_16915 0.50 +0.1 471,826 + CSW01_16915 0.55 +0.1 471,870 + CSW01_16915 0.60 -0.7 471,920 - CSW01_16915 0.66 -0.5 471,945 - CSW01_16915 0.68 +0.7 472,021 - CSW01_16915 0.77 -2.9 472,146 - -0.5 472,295 + -0.3 472,302 + +0.3 472,432 + +0.9 472,432 + +1.0 472,519 + -1.7 472,527 - -0.4 472,564 + +0.1 472,707 + CSW01_16920 0.25 -0.6 472,862 + CSW01_16920 0.50 -1.5 472,870 - CSW01_16920 0.51 -1.4 472,954 + CSW01_16920 0.64 -0.0 473,066 - CSW01_16920 0.82 -1.0 473,122 + +0.4 473,228 - +1.6 473,288 - -1.3 473,296 + -2.2 473,296 + -0.3 473,296 + +1.4 473,301 + +1.0 473,304 - -3.6 473,304 - -0.3 473,304 - +0.6 473,373 + +0.5 473,373 + -1.4 473,381 - +1.7 473,381 - +0.3 473,526 + +0.4 473,548 + -3.8 473,627 + CSW01_16925 0.11 -0.1 473,677 + CSW01_16925 0.20 -2.0 473,695 + CSW01_16925 0.23 +0.7 473,695 + CSW01_16925 0.23 +0.6 473,705 + CSW01_16925 0.25 +0.2 473,708 - CSW01_16925 0.26 +0.2 473,716 - CSW01_16925 0.27 -0.4 473,730 - CSW01_16925 0.30 -1.9 473,781 + CSW01_16925 0.39 -0.2 473,887 - CSW01_16925 0.59 +1.7 473,910 + CSW01_16925 0.63 -0.8 473,911 - CSW01_16925 0.63 -2.8 473,918 - CSW01_16925 0.64 +0.6 473,918 - CSW01_16925 0.64 -1.4 473,918 - CSW01_16925 0.64 +0.5 473,936 - CSW01_16925 0.68 -1.8 474,002 + CSW01_16925 0.80 +0.6 474,036 - CSW01_16925 0.86 +1.4 474,047 + CSW01_16925 0.88 -0.4 474,047 + CSW01_16925 0.88 -0.3
Or see this region's nucleotide sequence