Experiment: ICP3_phage_41.1_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16740 and CSW01_16745 overlap by 35 nucleotides CSW01_16745 and CSW01_16750 are separated by 219 nucleotides CSW01_16750 and CSW01_16755 are separated by 96 nucleotides CSW01_16755 and CSW01_16760 are separated by 58 nucleotides CSW01_16760 and CSW01_16765 are separated by 138 nucleotides CSW01_16765 and CSW01_16770 overlap by 4 nucleotides CSW01_16770 and CSW01_16775 are separated by 193 nucleotides
CSW01_16740: CSW01_16740 - DUF2442 domain-containing protein, at 429,486 to 430,007
_16740
CSW01_16745: CSW01_16745 - hypothetical protein, at 429,973 to 430,086
_16745
CSW01_16750: CSW01_16750 - DUF645 domain-containing protein, at 430,306 to 430,431
_16750
CSW01_16755: CSW01_16755 - hypothetical protein, at 430,528 to 430,623
_16755
CSW01_16760: CSW01_16760 - hypothetical protein, at 430,682 to 431,077
_16760
CSW01_16765: CSW01_16765 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 431,216 to 431,494
_16765
CSW01_16770: CSW01_16770 - damage-inducible protein J, at 431,491 to 431,775
_16770
CSW01_16775: CSW01_16775 - N-acetyltransferase, at 431,969 to 432,484
_16775
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.022 kb on - strand, within CSW01_16745 at 430.694 kb on + strand at 430.784 kb on + strand, within CSW01_16760 at 430.871 kb on + strand, within CSW01_16760 at 430.880 kb on + strand, within CSW01_16760 at 430.880 kb on + strand, within CSW01_16760 at 430.888 kb on - strand, within CSW01_16760 at 430.888 kb on - strand, within CSW01_16760 at 430.932 kb on - strand, within CSW01_16760 at 430.932 kb on - strand, within CSW01_16760 at 430.932 kb on - strand, within CSW01_16760 at 430.932 kb on - strand, within CSW01_16760
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2 remove 430,022 - CSW01_16745 0.43 -2.0 430,694 + +0.4 430,784 + CSW01_16760 0.26 -2.1 430,871 + CSW01_16760 0.48 -0.1 430,880 + CSW01_16760 0.50 -1.9 430,880 + CSW01_16760 0.50 -2.8 430,888 - CSW01_16760 0.52 -2.1 430,888 - CSW01_16760 0.52 -0.9 430,932 - CSW01_16760 0.63 -0.4 430,932 - CSW01_16760 0.63 -0.1 430,932 - CSW01_16760 0.63 +0.0 430,932 - CSW01_16760 0.63 +0.0
Or see this region's nucleotide sequence