Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16690

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16670 and CSW01_16675 overlap by 4 nucleotidesCSW01_16675 and CSW01_16680 are separated by 9 nucleotidesCSW01_16680 and CSW01_16685 are separated by 81 nucleotidesCSW01_16685 and CSW01_16690 overlap by 13 nucleotidesCSW01_16690 and CSW01_16695 are separated by 233 nucleotides CSW01_16670: CSW01_16670 - DUF1778 domain-containing protein, at 422,807 to 423,076 _16670 CSW01_16675: CSW01_16675 - N-acetyltransferase, at 423,073 to 423,606 _16675 CSW01_16680: CSW01_16680 - DUF3265 domain-containing protein, at 423,616 to 423,726 _16680 CSW01_16685: CSW01_16685 - prevent-host-death family protein, at 423,808 to 424,065 _16685 CSW01_16690: CSW01_16690 - type II toxin-antitoxin system RelE/ParE family toxin, at 424,053 to 424,355 _16690 CSW01_16695: CSW01_16695 - alpha/beta hydrolase, at 424,589 to 425,506 _16695 Position (kb) 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 423.092 kb on + strandat 423.178 kb on + strand, within CSW01_16675at 423.196 kb on + strand, within CSW01_16675at 423.196 kb on + strand, within CSW01_16675at 423.214 kb on + strand, within CSW01_16675at 423.222 kb on - strand, within CSW01_16675at 423.283 kb on + strand, within CSW01_16675at 423.370 kb on + strand, within CSW01_16675at 423.400 kb on - strand, within CSW01_16675at 423.400 kb on - strand, within CSW01_16675at 423.412 kb on + strand, within CSW01_16675at 423.425 kb on - strand, within CSW01_16675at 423.456 kb on + strand, within CSW01_16675at 423.542 kb on + strand, within CSW01_16675at 423.664 kb on + strand, within CSW01_16680at 423.846 kb on - strand, within CSW01_16685at 424.038 kb on + strand, within CSW01_16685at 424.082 kb on - strandat 424.083 kb on - strandat 424.087 kb on - strand, within CSW01_16690at 424.092 kb on - strand, within CSW01_16690at 424.112 kb on - strand, within CSW01_16690at 424.204 kb on - strand, within CSW01_16690at 424.902 kb on + strand, within CSW01_16695at 424.902 kb on + strand, within CSW01_16695at 424.908 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.912 kb on - strand, within CSW01_16695at 424.912 kb on - strand, within CSW01_16695at 424.921 kb on + strand, within CSW01_16695at 424.924 kb on + strand, within CSW01_16695at 424.926 kb on + strand, within CSW01_16695at 424.931 kb on + strand, within CSW01_16695at 424.939 kb on - strand, within CSW01_16695at 424.945 kb on + strand, within CSW01_16695at 424.945 kb on + strand, within CSW01_16695at 425.001 kb on + strand, within CSW01_16695at 425.035 kb on - strand, within CSW01_16695at 425.049 kb on + strand, within CSW01_16695at 425.057 kb on - strand, within CSW01_16695at 425.139 kb on + strand, within CSW01_16695at 425.148 kb on + strand, within CSW01_16695at 425.148 kb on + strand, within CSW01_16695at 425.227 kb on + strand, within CSW01_16695at 425.330 kb on + strand, within CSW01_16695at 425.338 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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423,092 + -3.4
423,178 + CSW01_16675 0.20 -1.6
423,196 + CSW01_16675 0.23 +0.9
423,196 + CSW01_16675 0.23 -1.0
423,214 + CSW01_16675 0.26 +0.3
423,222 - CSW01_16675 0.28 -1.3
423,283 + CSW01_16675 0.39 +1.0
423,370 + CSW01_16675 0.56 +0.9
423,400 - CSW01_16675 0.61 +0.7
423,400 - CSW01_16675 0.61 +1.4
423,412 + CSW01_16675 0.63 -0.9
423,425 - CSW01_16675 0.66 +1.1
423,456 + CSW01_16675 0.72 -1.0
423,542 + CSW01_16675 0.88 +0.3
423,664 + CSW01_16680 0.43 +0.7
423,846 - CSW01_16685 0.15 -0.7
424,038 + CSW01_16685 0.89 -0.1
424,082 - +0.0
424,083 - -0.2
424,087 - CSW01_16690 0.11 +0.1
424,092 - CSW01_16690 0.13 -2.3
424,112 - CSW01_16690 0.19 +0.8
424,204 - CSW01_16690 0.50 -2.2
424,902 + CSW01_16695 0.34 +1.8
424,902 + CSW01_16695 0.34 +0.2
424,908 - CSW01_16695 0.35 -1.8
424,910 - CSW01_16695 0.35 -0.6
424,910 - CSW01_16695 0.35 -2.6
424,910 - CSW01_16695 0.35 +0.3
424,910 - CSW01_16695 0.35 +0.2
424,912 - CSW01_16695 0.35 +0.4
424,912 - CSW01_16695 0.35 -0.3
424,921 + CSW01_16695 0.36 -0.1
424,924 + CSW01_16695 0.36 -0.9
424,926 + CSW01_16695 0.37 -1.3
424,931 + CSW01_16695 0.37 +0.4
424,939 - CSW01_16695 0.38 +0.7
424,945 + CSW01_16695 0.39 -1.7
424,945 + CSW01_16695 0.39 -2.9
425,001 + CSW01_16695 0.45 +1.0
425,035 - CSW01_16695 0.49 +1.3
425,049 + CSW01_16695 0.50 -1.8
425,057 - CSW01_16695 0.51 +1.3
425,139 + CSW01_16695 0.60 +0.8
425,148 + CSW01_16695 0.61 -0.8
425,148 + CSW01_16695 0.61 +0.7
425,227 + CSW01_16695 0.69 -1.8
425,330 + CSW01_16695 0.81 +0.6
425,338 - CSW01_16695 0.82 -0.8
425,340 - CSW01_16695 0.82 -2.3
425,340 - CSW01_16695 0.82 +0.5

Or see this region's nucleotide sequence