Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16450

Experiment: ICP3_phage_41.1_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16440 and CSW01_16445 are separated by 99 nucleotidesCSW01_16445 and CSW01_16450 are separated by 382 nucleotidesCSW01_16450 and CSW01_16455 are separated by 232 nucleotidesCSW01_16455 and CSW01_16460 overlap by 10 nucleotides CSW01_16440: CSW01_16440 - hypothetical protein, at 402,004 to 402,401 _16440 CSW01_16445: CSW01_16445 - hypothetical protein, at 402,501 to 402,965 _16445 CSW01_16450: CSW01_16450 - sulfate transporter subunit, at 403,348 to 404,333 _16450 CSW01_16455: CSW01_16455 - DJ-1/PfpI family protein, at 404,566 to 405,162 _16455 CSW01_16460: CSW01_16460 - acetyltransferase, at 405,153 to 405,290 _16460 Position (kb) 403 404 405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 402.375 kb on - strandat 402.437 kb on + strandat 402.450 kb on - strandat 402.452 kb on + strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.460 kb on - strandat 402.467 kb on - strandat 402.597 kb on + strand, within CSW01_16445at 402.597 kb on + strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.605 kb on - strand, within CSW01_16445at 402.641 kb on + strand, within CSW01_16445at 402.642 kb on + strand, within CSW01_16445at 402.645 kb on - strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.652 kb on + strand, within CSW01_16445at 402.655 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.660 kb on - strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.749 kb on + strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.757 kb on - strand, within CSW01_16445at 402.762 kb on - strand, within CSW01_16445at 402.767 kb on + strand, within CSW01_16445at 402.801 kb on + strand, within CSW01_16445at 402.821 kb on - strand, within CSW01_16445at 402.902 kb on + strand, within CSW01_16445at 402.991 kb on + strandat 403.033 kb on - strandat 403.045 kb on - strandat 403.108 kb on - strandat 403.109 kb on - strandat 403.126 kb on + strandat 403.150 kb on + strandat 403.170 kb on - strandat 403.214 kb on + strandat 403.222 kb on - strandat 403.243 kb on - strandat 403.259 kb on + strandat 403.314 kb on + strandat 403.322 kb on - strandat 403.351 kb on + strandat 403.403 kb on + strandat 403.403 kb on + strandat 403.403 kb on + strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.410 kb on - strandat 403.458 kb on + strand, within CSW01_16450at 403.519 kb on + strand, within CSW01_16450at 403.558 kb on - strand, within CSW01_16450at 403.564 kb on - strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.726 kb on - strand, within CSW01_16450at 403.761 kb on + strand, within CSW01_16450at 403.761 kb on - strand, within CSW01_16450at 403.762 kb on - strand, within CSW01_16450at 403.768 kb on + strand, within CSW01_16450at 403.776 kb on - strand, within CSW01_16450at 403.821 kb on - strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.892 kb on - strand, within CSW01_16450at 403.899 kb on + strand, within CSW01_16450at 403.907 kb on - strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.938 kb on - strand, within CSW01_16450at 403.967 kb on + strand, within CSW01_16450at 403.975 kb on - strand, within CSW01_16450at 403.999 kb on + strand, within CSW01_16450at 404.009 kb on + strand, within CSW01_16450at 404.146 kb on + strand, within CSW01_16450at 404.154 kb on - strand, within CSW01_16450at 404.154 kb on - strand, within CSW01_16450at 404.160 kb on + strand, within CSW01_16450at 404.214 kb on + strand, within CSW01_16450at 404.214 kb on + strand, within CSW01_16450at 404.222 kb on - strand, within CSW01_16450at 404.222 kb on - strand, within CSW01_16450at 404.267 kb on - strandat 404.462 kb on - strandat 404.462 kb on - strandat 404.630 kb on + strand, within CSW01_16455at 404.631 kb on + strand, within CSW01_16455at 404.655 kb on - strand, within CSW01_16455at 404.665 kb on + strand, within CSW01_16455at 404.814 kb on - strand, within CSW01_16455at 404.859 kb on + strand, within CSW01_16455at 404.974 kb on + strand, within CSW01_16455at 405.023 kb on + strand, within CSW01_16455at 405.030 kb on + strand, within CSW01_16455at 405.109 kb on - strandat 405.144 kb on - strandat 405.191 kb on - strand, within CSW01_16460at 405.196 kb on - strand, within CSW01_16460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep2
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402,375 - -0.5
402,437 + -1.1
402,450 - -1.3
402,452 + +0.4
402,460 - -0.4
402,460 - +0.5
402,460 - -0.3
402,460 - -2.5
402,467 - +0.8
402,597 + CSW01_16445 0.21 +0.2
402,597 + CSW01_16445 0.21 +0.0
402,605 - CSW01_16445 0.22 -0.4
402,605 - CSW01_16445 0.22 -0.6
402,605 - CSW01_16445 0.22 -1.2
402,641 + CSW01_16445 0.30 -1.0
402,642 + CSW01_16445 0.30 +0.4
402,645 - CSW01_16445 0.31 +0.3
402,652 + CSW01_16445 0.32 -1.1
402,652 + CSW01_16445 0.32 +0.7
402,652 + CSW01_16445 0.32 +0.8
402,652 + CSW01_16445 0.32 -3.5
402,655 - CSW01_16445 0.33 -3.8
402,660 - CSW01_16445 0.34 -0.4
402,660 - CSW01_16445 0.34 -2.1
402,660 - CSW01_16445 0.34 -1.2
402,660 - CSW01_16445 0.34 -0.8
402,660 - CSW01_16445 0.34 +0.0
402,660 - CSW01_16445 0.34 -0.7
402,660 - CSW01_16445 0.34 -2.7
402,660 - CSW01_16445 0.34 -1.7
402,749 + CSW01_16445 0.53 +0.6
402,749 + CSW01_16445 0.53 -3.0
402,757 - CSW01_16445 0.55 +0.5
402,757 - CSW01_16445 0.55 -0.2
402,762 - CSW01_16445 0.56 +0.6
402,767 + CSW01_16445 0.57 -0.8
402,801 + CSW01_16445 0.65 -3.5
402,821 - CSW01_16445 0.69 -2.2
402,902 + CSW01_16445 0.86 -0.3
402,991 + -1.9
403,033 - -0.4
403,045 - -0.7
403,108 - +0.5
403,109 - -0.2
403,126 + +0.7
403,150 + +0.2
403,170 - -0.3
403,214 + -3.5
403,222 - -1.0
403,243 - -0.2
403,259 + -0.1
403,314 + -1.9
403,322 - +0.2
403,351 + +0.3
403,403 + +0.4
403,403 + +0.6
403,403 + -0.3
403,410 - +0.1
403,410 - -1.3
403,410 - -0.8
403,410 - +2.2
403,458 + CSW01_16450 0.11 -0.9
403,519 + CSW01_16450 0.17 +0.1
403,558 - CSW01_16450 0.21 +0.1
403,564 - CSW01_16450 0.22 -0.6
403,708 + CSW01_16450 0.37 -1.2
403,708 + CSW01_16450 0.37 -3.3
403,708 + CSW01_16450 0.37 -1.7
403,716 - CSW01_16450 0.37 -1.9
403,716 - CSW01_16450 0.37 -1.5
403,716 - CSW01_16450 0.37 -0.3
403,716 - CSW01_16450 0.37 +0.6
403,726 - CSW01_16450 0.38 -3.1
403,761 + CSW01_16450 0.42 -0.3
403,761 - CSW01_16450 0.42 -0.3
403,762 - CSW01_16450 0.42 +1.4
403,768 + CSW01_16450 0.43 -1.6
403,776 - CSW01_16450 0.43 -1.0
403,821 - CSW01_16450 0.48 -0.1
403,852 + CSW01_16450 0.51 -1.6
403,852 + CSW01_16450 0.51 +0.5
403,852 + CSW01_16450 0.51 -2.2
403,852 + CSW01_16450 0.51 +0.6
403,852 + CSW01_16450 0.51 -0.7
403,852 + CSW01_16450 0.51 -0.6
403,852 + CSW01_16450 0.51 -0.6
403,852 + CSW01_16450 0.51 +0.3
403,852 + CSW01_16450 0.51 -0.6
403,852 + CSW01_16450 0.51 -0.1
403,852 + CSW01_16450 0.51 +0.1
403,852 + CSW01_16450 0.51 +0.6
403,852 + CSW01_16450 0.51 +0.4
403,852 + CSW01_16450 0.51 +0.3
403,852 + CSW01_16450 0.51 -0.5
403,852 + CSW01_16450 0.51 +0.3
403,852 + CSW01_16450 0.51 +0.0
403,852 + CSW01_16450 0.51 -2.1
403,852 + CSW01_16450 0.51 +0.1
403,852 + CSW01_16450 0.51 -0.2
403,860 - CSW01_16450 0.52 -0.4
403,860 - CSW01_16450 0.52 +0.6
403,860 - CSW01_16450 0.52 -3.1
403,860 - CSW01_16450 0.52 -0.1
403,860 - CSW01_16450 0.52 -2.1
403,860 - CSW01_16450 0.52 -1.1
403,860 - CSW01_16450 0.52 -3.0
403,860 - CSW01_16450 0.52 +0.9
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 +0.2
403,860 - CSW01_16450 0.52 +0.4
403,860 - CSW01_16450 0.52 +0.8
403,860 - CSW01_16450 0.52 +0.6
403,860 - CSW01_16450 0.52 -1.5
403,860 - CSW01_16450 0.52 -1.5
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 -0.4
403,860 - CSW01_16450 0.52 -0.1
403,860 - CSW01_16450 0.52 +0.1
403,860 - CSW01_16450 0.52 -0.2
403,860 - CSW01_16450 0.52 +0.5
403,860 - CSW01_16450 0.52 +0.0
403,860 - CSW01_16450 0.52 +0.4
403,860 - CSW01_16450 0.52 +0.2
403,860 - CSW01_16450 0.52 -0.5
403,860 - CSW01_16450 0.52 -0.3
403,892 - CSW01_16450 0.55 +0.7
403,899 + CSW01_16450 0.56 +0.3
403,907 - CSW01_16450 0.57 -1.5
403,930 + CSW01_16450 0.59 -1.4
403,930 + CSW01_16450 0.59 +0.4
403,938 - CSW01_16450 0.60 -2.7
403,967 + CSW01_16450 0.63 +0.5
403,975 - CSW01_16450 0.64 +0.5
403,999 + CSW01_16450 0.66 -1.7
404,009 + CSW01_16450 0.67 -2.5
404,146 + CSW01_16450 0.81 +0.2
404,154 - CSW01_16450 0.82 +0.5
404,154 - CSW01_16450 0.82 -1.8
404,160 + CSW01_16450 0.82 +1.2
404,214 + CSW01_16450 0.88 -1.7
404,214 + CSW01_16450 0.88 -1.3
404,222 - CSW01_16450 0.89 -0.4
404,222 - CSW01_16450 0.89 -3.2
404,267 - +1.0
404,462 - +0.6
404,462 - -0.5
404,630 + CSW01_16455 0.11 +0.1
404,631 + CSW01_16455 0.11 +0.7
404,655 - CSW01_16455 0.15 +0.0
404,665 + CSW01_16455 0.17 -1.8
404,814 - CSW01_16455 0.42 -0.8
404,859 + CSW01_16455 0.49 -1.9
404,974 + CSW01_16455 0.68 -1.4
405,023 + CSW01_16455 0.77 -0.7
405,030 + CSW01_16455 0.78 +0.8
405,109 - -0.2
405,144 - -0.2
405,191 - CSW01_16460 0.28 -3.0
405,196 - CSW01_16460 0.31 +0.4

Or see this region's nucleotide sequence